RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 GPR146Q96CH1 333 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 EAF1Q96JC9 268 aaPredicted RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 LINC00470Q9BZP3 86 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 PILRBQ9UKJ0 227 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 ELF5Q9UKW6 265 aaPredicted RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 IGLV1-36A0A0B4J1U3 117 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 IGHV3-72A0A0B4J1Y9 119 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 A0A1B0GW15 77 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 NPIPB13A6NJU9 1138 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 NPIPB4C9JG80 1138 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 TM4SF5O14894 197 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 SSTR5P35346 364 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 ZPLD1Q8TCW7 415 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 KLF14Q8TD94 323 aaPredicted RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 GGACTQ9BVM4 153 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 G6PC2Q9NQR9 355 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 IGKV3D-15A0A087WSY6 115 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 TRBV5-7A0A0A0MS05 114 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 ATXN7O15265 892 aaPredicted RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 IGKV3-15P01624 115 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 RNASE1P07998 156 aaKnown RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 COX6A1P12074 109 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 APOBEC3AP31941 199 aaPredicted RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 FXYD3Q14802 87 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 ZNF79Q15937 498 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 TTC32Q5I0X7 151 aa5.55□□□□□ -1.52
UPF2-201ENST00000356352 SRSF12Q8WXF0 261 aaKnown RBP5.55□□□□□ -1.52
UPF2-201ENST00000356352 SHROOM3Q8TF72 1996 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 EVPLQ92817 2033 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 ARL14EPLP0DKL9 152 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 PAX1P15863 534 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 RUNX1Q01196 453 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 FAM209BQ5JX69 171 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 DCAF12L2Q5VW00 463 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 TPRX1Q8N7U7 411 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 SAP25Q8TEE9 199 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 GATAD1Q8WUU5 269 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 TLNRD1Q9H1K6 362 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 FAM206AQ9NX38 181 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 OR5AC2Q9NZP5 309 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 ZNF831Q5JPB2 1677 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 NKX2-8O15522 239 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 CEACAM4O75871 244 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 VSIG10L2P0DP72 767 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 ASIPP42127 132 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 HIST1H1AQ02539 215 aaPredicted RBP5.54□□□□□ -1.52
UPF2-201ENST00000356352 MEF2CQ06413 473 aaPredicted RBP5.54□□□□□ -1.52
UPF2-201ENST00000356352 TCF23Q7RTU1 214 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 SLC22A18ASQ8N1D0 253 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 FAM181AQ8N9Y4 354 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 CLDND2Q8NHS1 167 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 PSMG3Q9BT73 122 aaPredicted RBP5.54□□□□□ -1.52
UPF2-201ENST00000356352 AURKAIP1Q9NWT8 199 aaPredicted RBP5.54□□□□□ -1.52
UPF2-201ENST00000356352 SOX21Q9Y651 276 aaPredicted RBP5.54□□□□□ -1.52
UPF2-201ENST00000356352 QSER1Q2KHR3 1735 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 LOC102724200A0A096LPH7 203 aaPredicted RBP5.54□□□□□ -1.52
UPF2-201ENST00000356352 TMEM250H0YL14 139 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 IL4P05112 153 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 IL11P20809 199 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 OR4D5Q8NGN0 318 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 Q96M66 194 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 TUBA4BQ9H853 241 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 PLSCR2Q9NRY7 297 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 PEMTQ9UBM1 199 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 TNFRSF18Q9Y5U5 241 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 CGB1A6NKQ9 187 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 TMEM262E9PQX1 116 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 TCF21O43680 179 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 RECKO95980 971 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 SP9P0CG40 484 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 P2RY4P51582 365 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 HBBP68871 147 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 FAM219BQ5XKK7 198 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 TCF19Q9Y242 345 aa5.54□□□□□ -1.52
UPF2-201ENST00000356352 MOSPD3O75425 235 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 NTN1O95631 604 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 AGAP20933 346 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 SUMO2P61956 95 aaKnown RBP5.53□□□□□ -1.52
UPF2-201ENST00000356352 UNC119Q13432 240 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 LY6EQ16553 131 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 C1orf162Q8NEQ5 155 aaPredicted RBP5.53□□□□□ -1.52
UPF2-201ENST00000356352 OR4X2Q8NGF9 303 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 OSR1Q8TAX0 266 aaPredicted RBP5.53□□□□□ -1.52
UPF2-201ENST00000356352 TMEM74BQ9NUR3 256 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 NUMA1Q14980 2115 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 LAMB2P55268 1798 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 RBMY1BA6NDE4 496 aaKnown RBP5.53□□□□□ -1.52
UPF2-201ENST00000356352 RBMY1EA6NEQ0 496 aaKnown RBP5.53□□□□□ -1.52
UPF2-201ENST00000356352 VENTXO95231 258 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 RBMY1DP0C7P1 496 aaKnown RBP5.53□□□□□ -1.52
UPF2-201ENST00000356352 RBMY1A1P0DJD3 496 aaKnown RBP5.53□□□□□ -1.52
UPF2-201ENST00000356352 RBMY1CP0DJD4 496 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 FAM90A1Q86YD7 464 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 HAX1O00165 279 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 EMP1P54849 157 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 TIMM23BQ5SRD1 257 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 Q6AWC8 147 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 CYP2G1PQ6ZSU1 146 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 PNKDQ8N490 385 aa5.53□□□□□ -1.52
UPF2-201ENST00000356352 OR5P3Q8WZ94 311 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms