RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 NANPQ8TBE9 248 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 CD300LFQ8TDQ1 290 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 C22orf15Q8WYQ4 148 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 TMEM56Q96MV1 263 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 GAFA1Q96PS6 74 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 YPEL2Q96QA6 119 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 SPIN2AQ99865 258 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 SPIN2BQ9BPZ2 258 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 TMEM222Q9H0R3 208 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 GAL3ST2Q9H3Q3 398 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 GAB2Q9UQC2 676 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 LINC00312Q9Y6C7 94 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 TMEM56-RWDD3S4R434 201 aa5.67□□□□□ -1.5
VPS13A-201ENST00000355766 WNK1Q9H4A3 2382 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 C3orf85A0A1B0GTC6 90 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 KBTBD11-OT1A0A1B0GTJ5 212 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 DIRC3C9JPN6 131 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 G3V3Q6 166 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 C15orf65H3BRN8 121 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 M0QZ24 198 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 TNFRSF13BO14836 293 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-201ENST00000355766 BET1O15155 118 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 RBFOX2O43251 390 aaKnown RBP eCLIP5.66□□□□□ -1.5
VPS13A-201ENST00000355766 HSPA12AO43301 675 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 HBZP02008 142 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 CGB3P0DN86 165 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 CGB7P0DN87 165 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 MDKP21741 143 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-201ENST00000355766 NFYAP23511 347 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-201ENST00000355766 F2RP25116 425 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 ARHGDIBP52566 201 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 CCL8P80075 99 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 AESQ08117 197 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 BAMBIQ13145 260 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 CATR1Q13166 79 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 TMEM187Q14656 261 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 PDCD1Q15116 288 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 LRRC10Q5BKY1 277 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 RBMS3Q6XE24 437 aaKnown RBP5.66□□□□□ -1.5
VPS13A-201ENST00000355766 ZNF66Q6ZN08 573 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 FAM219AQ8IW50 185 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 C9orf62Q8N4C0 152 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 UXS1Q8NBZ7 420 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 OR52B4Q8NGK2 314 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 GRPEL2Q8TAA5 225 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 LINC00476Q8WZB0 136 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 TOMM40LQ969M1 308 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 TIMD4Q96H15 378 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 DUX5Q96PT3 197 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 HSD17B10Q99714 261 aaKnown RBP5.66□□□□□ -1.5
VPS13A-201ENST00000355766 SLC5A7Q9GZV3 580 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 PRDM13Q9H4Q3 707 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 SLA2Q9H6Q3 261 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 BEX1Q9HBH7 125 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 RDH8Q9NYR8 311 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 COMMD9Q9P000 198 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 CLN8Q9UBY8 286 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 MAB21L2Q9Y586 359 aa5.66□□□□□ -1.5
VPS13A-201ENST00000355766 A0A1W2PPH5 198 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 RP2O75695 350 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 OR2F2O95006 317 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 LYL1P12980 280 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 VDAC1P21796 283 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 CD80P33681 288 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 KIR2DS2P43631 304 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 FXYD4P59646 89 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 FOXI1Q12951 378 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 IL15RAQ13261 267 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 OR2F1Q13607 317 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 ANKRD55Q3KP44 614 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 C19orf54Q5BKX5 351 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 DCAF12L2Q5VW00 463 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 FAM71F2Q6NXP2 309 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 ZNF818PQ6ZRF7 136 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 BATF2Q8N1L9 274 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 OR13A1Q8NGR1 328 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 CASTOR1Q8WTX7 329 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 IL1F10Q8WWZ1 152 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 RBPMSQ93062 196 aaKnown RBP5.65□□□□□ -1.5
VPS13A-201ENST00000355766 LSM10Q969L4 123 aaKnown RBP5.65□□□□□ -1.5
VPS13A-201ENST00000355766 ARL11Q969Q4 196 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 C2orf50Q96LR7 162 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 PDCD10Q9BUL8 212 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 COA4Q9NYJ1 87 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 CALYQ9NYX4 217 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 SLC25A10Q9UBX3 287 aaPredicted RBP5.65□□□□□ -1.5
VPS13A-201ENST00000355766 MMP24Q9Y5R2 645 aa5.65□□□□□ -1.5
VPS13A-201ENST00000355766 DSCAML1Q8TD84 2053 aa5.65□□□□□ -1.51
VPS13A-201ENST00000355766 BIRC6Q9NR09 4857 aa5.65□□□□□ -1.51
VPS13A-201ENST00000355766 A0A087X0M5 115 aa5.64□□□□□ -1.51
VPS13A-201ENST00000355766 IGKV1D-13A0A0B4J2D9 117 aa5.64□□□□□ -1.51
VPS13A-201ENST00000355766 A0A0D9SG52 128 aa5.64□□□□□ -1.51
VPS13A-201ENST00000355766 IGHV3-64DA0A0J9YX35 117 aa5.64□□□□□ -1.51
VPS13A-201ENST00000355766 A0A1B0GX30 115 aa5.64□□□□□ -1.51
VPS13A-201ENST00000355766 FAM90A9PA6NNJ1 464 aa5.64□□□□□ -1.51
VPS13A-201ENST00000355766 B5MCH6 92 aa5.64□□□□□ -1.51
VPS13A-201ENST00000355766 CLDN34H7C241 214 aa5.64□□□□□ -1.51
VPS13A-201ENST00000355766 TIMM23O14925 209 aa5.64□□□□□ -1.51
VPS13A-201ENST00000355766 PPIHO43447 177 aaKnown RBP5.64□□□□□ -1.51
VPS13A-201ENST00000355766 NDUFB3O43676 98 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms