RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 LYRM2Q9NU23 88 aaPredicted RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 OR14J1Q9UGF5 321 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 SH3BGRL2Q9UJC5 107 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 POMT1Q9Y6A1 747 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 TNCP24821 2201 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 USP9XQ93008 2570 aaPredicted RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 OR5B21A6NL26 309 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 TMEM210A6NLX4 147 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 INS-IGF2F8WCM5 200 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 NDUFS6O75380 124 aaKnown RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 MRPL33O75394 65 aaKnown RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 PLAUP00749 431 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 IGHV1-46P01743 117 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 CD2P06729 351 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 MUC1P15941 1255 aaPredicted RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 NDUFB7P17568 137 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 SRD5A1P18405 259 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 M6PRP20645 277 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 PRKACBP22694 351 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 GABRR1P24046 479 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 MFAP2P55001 183 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 PIGPP57054 158 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 GNG2P59768 71 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 HTD2P86397 168 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 PLGLB1Q02325 96 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 GUCA2BQ16661 112 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 IZUMO4Q1ZYL8 232 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 EIF2S3LQ2VIR3 472 aaKnown RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 SP6Q3SY56 376 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 ANXA2RQ3ZCQ2 193 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 SMUG1Q53HV7 270 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 SPIN3Q5JUX0 258 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 SPATA46Q5T0L3 261 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 ZNF788Q6ZQV5 615 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 SLC51BQ86UW2 128 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 GCNT2Q8N0V5 402 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 DRAM1Q8N682 238 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 BPIFCQ8NFQ6 507 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 TOMM40LQ969M1 308 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 APH1AQ96BI3 265 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 GPR146Q96CH1 333 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 FER1L6-AS2Q96M78 137 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 GPER1Q99527 375 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 NPFFR1Q9GZQ6 430 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 METTL9Q9H1A3 318 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 CCL28Q9NRJ3 127 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 ZNRD1Q9P1U0 126 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 PAIP2BQ9ULR5 123 aaKnown RBP1.86□□□□□ -2.11
VPS54-202ENST00000354504 PLXNB1O43157 2135 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 TENM1Q9UKZ4 2725 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 PKHD1P08F94 4074 aa1.86□□□□□ -2.11
VPS54-202ENST00000354504 ANKHD1Q8IWZ3 2542 aaKnown RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 IGKV1D-37A0A075B6S9 117 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 TRAV39A0A0B4J263 110 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 C3orf85A0A1B0GTC6 90 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 FAM230AA0A1W2PPH8 454 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 C15orf62A8K5M9 175 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 KLRC4-KLRK1H3BQV0 150 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 TIMM23O14925 209 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 ARPC5O15511 151 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 IFNA2P01563 188 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 RLN1P04808 185 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 OR8U8P0C7N1 319 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 OR8U9P0C7N5 309 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 OR9G9P0C7N8 305 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 FOLR2P14207 255 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 DUTP33316 252 aaKnown RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 ZNF81P51508 661 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 KLF3P57682 345 aaPredicted RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 TAS2R46P59540 309 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 PCBD1P61457 104 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 TSPAN5P62079 268 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 DIAPH2-AS1Q14236 149 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 PAN3Q58A45 887 aaKnown RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 TIMM23BQ5SRD1 257 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 NCR3LG1Q68D85 454 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 TEX38Q6PEX7 206 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 ZNF833PQ6ZTB9 187 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 Q71RC1 249 aaPredicted RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 COMMD7Q86VX2 200 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 FOXRED2Q8IWF2 684 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 C8orf31Q8N9H6 132 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 OR10Z1Q8NGY1 313 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 OR2G3Q8NGZ4 309 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 OR8U1Q8NH10 309 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 OR1L1Q8NH94 360 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 C8orf46Q8TAG6 207 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 RND1Q92730 232 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 LSM10Q969L4 123 aaKnown RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 ABHD14BQ96IU4 210 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 ADAT1Q9BUB4 502 aaKnown RBP1.85□□□□□ -2.11
VPS54-202ENST00000354504 ST6GALNAC5Q9BVH7 336 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 CHIAQ9BZP6 476 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 C12orf4Q9NQ89 552 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 FBXL17Q9UF56 701 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 TP53TG5Q9Y2B4 290 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 MEMO1Q9Y316 297 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 OR2W1Q9Y3N9 320 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 MTORP42345 2549 aa1.85□□□□□ -2.11
VPS54-202ENST00000354504 GCN1Q92616 2671 aaKnown RBP1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms