RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SDF2L1Q9HCN8 221 aa10.96□□□□□ -0.65
COL6A3-203ENST00000353578 WTIPA6NIX2 430 aaPredicted RBP10.96□□□□□ -0.66
COL6A3-203ENST00000353578 COLCA2A8K830 154 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 POU2F2P09086 479 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 C8orf88P0DMB2 117 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 MED29Q9NX70 200 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 PLXNA2O75051 1894 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 FUT5Q11128 374 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 TMEM78Q5T7P6 136 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 GEMIN7Q9H840 131 aaKnown RBP10.96□□□□□ -0.66
COL6A3-203ENST00000353578 FGF21Q9NSA1 209 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 PLXNB2O15031 1838 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 ASIPP42127 132 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 RBM11P57052 281 aaKnown RBP10.96□□□□□ -0.66
COL6A3-203ENST00000353578 KLF12Q9Y4X4 402 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 IDSB3KWA1 339 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 CDC42EP2O14613 210 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 CD5LO43866 347 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 LGALS1P09382 135 aaKnown RBP10.96□□□□□ -0.66
COL6A3-203ENST00000353578 C2orf83Q53S99 150 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 OR1K1Q8NGR3 316 aa10.96□□□□□ -0.66
COL6A3-203ENST00000353578 APOBEC4Q8WW27 367 aaKnown RBP10.96□□□□□ -0.66
COL6A3-203ENST00000353578 MRPL27Q9P0M9 148 aaKnown RBP10.96□□□□□ -0.66
COL6A3-203ENST00000353578 TDGF1P3P51864 188 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 NUBP1P53384 320 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 GRIFINA4D1Z8 144 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 PEX11BO96011 259 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 OR2Z1Q8NG97 314 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 PCNX1Q96RV3 2341 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 CRXO43186 299 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-203ENST00000353578 THY1P04216 161 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 CENPWQ5EE01 88 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 C1orf185Q5T7R7 199 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 FLYWCH2Q96CP2 140 aaKnown RBP10.95□□□□□ -0.66
COL6A3-203ENST00000353578 IGHV2-70P01814 119 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 LYG1Q8N1E2 194 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 PRSS2P07478 247 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 SPINK8P0C7L1 97 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 ZNF658BQ4V348 819 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-203ENST00000353578 SARAFQ96BY9 339 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 DLL1O00548 723 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 HOXA3O43365 443 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-203ENST00000353578 TBR1Q16650 682 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 FOXB1Q99853 325 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 A0A1B0GTI1 187 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 MED19A0JLT2 244 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-203ENST00000353578 CXXC4Q9H2H0 198 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 TRBV5-7A0A0A0MS05 114 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 PPIAL4DF5H284 164 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 NDUFB3O43676 98 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 SERF1AO75920 110 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 OR4C3Q8NH37 302 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 AGMATQ9BSE5 352 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 PHLDA3Q9Y5J5 127 aa10.95□□□□□ -0.66
COL6A3-203ENST00000353578 TRAV8-7A0A075B6U6 113 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 ZNF841Q6ZN19 808 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 OLIG3Q7RTU3 272 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 SPRED2Q7Z698 418 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 IL36RNQ9UBH0 155 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 CFAP161Q6P656 301 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 PROCRQ9UNN8 238 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 CLLU1OSQ5K130 101 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 INAFM2P0DMQ5 153 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 ZNF585BQ52M93 769 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 HDHD3Q9BSH5 251 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-203ENST00000353578 PLXNA3P51805 1871 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 TRPM7Q96QT4 1865 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 DRAM1Q8N682 238 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 ELNP15502 786 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 TSPOP30536 169 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 UNQ9370/PRO34162Q6UXP9 181 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 BATF2Q8N1L9 274 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 OSTCQ9NRP0 149 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 ATP23Q9Y6H3 246 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 LY96Q9Y6Y9 160 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 RBMY1BA6NDE4 496 aaKnown RBP10.94□□□□□ -0.66
COL6A3-203ENST00000353578 RBMY1EA6NEQ0 496 aaKnown RBP10.94□□□□□ -0.66
COL6A3-203ENST00000353578 GDF9O60383 454 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 RBMY1DP0C7P1 496 aaKnown RBP10.94□□□□□ -0.66
COL6A3-203ENST00000353578 RBMY1A1P0DJD3 496 aaKnown RBP10.94□□□□□ -0.66
COL6A3-203ENST00000353578 RBMY1CP0DJD4 496 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 CCDC144NLQ6NUI1 221 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 CRISPLD2Q9H0B8 497 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 HS3ST3B1Q9Y662 390 aa10.94□□□□□ -0.66
COL6A3-203ENST00000353578 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-203ENST00000353578 ACTL10Q5JWF8 245 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 OR13H1Q8NG92 308 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 LOC389332A0A1B0GUA5 103 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 TMEM238C9JI98 176 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 DPM2O94777 84 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 HOXC4P09017 264 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-203ENST00000353578 OR51G1Q8NGK1 321 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 WNT10AQ9GZT5 417 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 DLX6P56179 175 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 DNAJC25-GNG10A0A024R161 153 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 THSD4Q6ZMP0 1018 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 AMBPP02760 352 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 ZNF137PP52743 207 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 ZNF714Q96N38 554 aa10.93□□□□□ -0.66
COL6A3-203ENST00000353578 RPL31P62899 125 aaKnown RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms