RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 PXMP4Q9Y6I8 212 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 F8P00451 2351 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 ZFYVE26Q68DK2 2539 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 LINC01387J3KSC0 135 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 SS18L1O75177 396 aaPredicted RBP6.85□□□□□ -1.31
CIITA-201ENST00000324288 C1orf122Q6ZSJ8 110 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 SSBP3Q9BWW4 388 aaPredicted RBP6.85□□□□□ -1.31
CIITA-201ENST00000324288 LAMB2P55268 1798 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 BEND2Q8NDZ0 799 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 SRSF12Q8WXF0 261 aaKnown RBP6.85□□□□□ -1.31
CIITA-201ENST00000324288 RNF122Q9H9V4 155 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 GPR35Q9HC97 309 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 MRPS18BQ9Y676 258 aaKnown RBP6.85□□□□□ -1.31
CIITA-201ENST00000324288 GDF9O60383 454 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 KIR3DL2P43630 455 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 CDX1P47902 265 aaPredicted RBP6.85□□□□□ -1.31
CIITA-201ENST00000324288 NXPH1P58417 271 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 MESTQ5EB52 335 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 TMEM211Q6ICI0 200 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 LEAP2Q969E1 77 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 IMMP2LQ96T52 175 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 YBX2Q9Y2T7 364 aaKnown RBP6.85□□□□□ -1.31
CIITA-201ENST00000324288 DNAL4O96015 105 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 PRF1P14222 555 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 MEF2BQ02080 365 aaPredicted RBP6.85□□□□□ -1.31
CIITA-201ENST00000324288 HSPB7Q9UBY9 170 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 MOB4Q9Y3A3 225 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 NKX2-2O95096 273 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 DLX6P56179 175 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 CCL13Q99616 98 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 TRAV21A0A0B4J279 112 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 PF4V1P10720 104 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 LINC01465Q8N7H1 131 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 OR6X1Q8NH79 312 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 LINC00615Q96LM1 132 aaPredicted RBP6.85□□□□□ -1.31
CIITA-201ENST00000324288 DNAJC4Q9NNZ3 241 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 CLDN14O95500 239 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 CELA2AP08217 269 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 MRGPRX3Q96LB0 322 aa6.85□□□□□ -1.31
CIITA-201ENST00000324288 NAA38Q9BRA0 125 aaKnown RBP6.85□□□□□ -1.31
CIITA-201ENST00000324288 GLIPR1P48060 266 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 C10orf111Q8N326 155 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 GPR146Q96CH1 333 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 A0A1W2PP11 408 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 LIPT2A6NK58 231 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 CACNG7P62955 275 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 EBLN2Q6P2I7 272 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 SCTP09683 121 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 LINC00869P0C866 280 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 P2RY4P51582 365 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 CENPWQ5EE01 88 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 IBA57Q5T440 356 aaKnown RBP6.84□□□□□ -1.31
CIITA-201ENST00000324288 FAM53AQ6NSI3 398 aaPredicted RBP6.84□□□□□ -1.31
CIITA-201ENST00000324288 VSTM2AQ8TAG5 236 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 PRNDQ9UKY0 176 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 C2orf16Q68DN1 1984 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 IGHV3-35A0A0C4DH35 117 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 ISG15P05161 165 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 ERGP11308 486 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 HOGA1Q86XE5 327 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 SMAD7O15105 426 aaKnown RBP6.84□□□□□ -1.31
CIITA-201ENST00000324288 SFRP2Q96HF1 295 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 METTL26Q96S19 204 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 PRSS27Q9BQR3 290 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 RREB1Q92766 1687 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 IGHV3-49A0A0A0MS15 119 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 CD300LDQ6UXZ3 194 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 LRRC3BQ96PB8 259 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 RNF7Q9UBF6 113 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 PMCHL1Q16048 86 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 SAPCD1Q5SSQ6 148 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 MRAP2Q96G30 205 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 PGLYRP3Q96LB9 341 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 ARAP2Q8WZ64 1704 aa6.84□□□□□ -1.31
CIITA-201ENST00000324288 IGHV3OR16-13A0A075B7E8 117 aa6.84□□□□□ -1.32
CIITA-201ENST00000324288 IGHV3-74A0A0B4J1X5 117 aa6.84□□□□□ -1.32
CIITA-201ENST00000324288 NDUFS8O00217 210 aa6.84□□□□□ -1.32
CIITA-201ENST00000324288 HKR1P10072 659 aa6.84□□□□□ -1.32
CIITA-201ENST00000324288 TLN2Q9Y4G6 2542 aa6.84□□□□□ -1.32
CIITA-201ENST00000324288 PKD1L3Q7Z443 1732 aa6.84□□□□□ -1.32
CIITA-201ENST00000324288 APOMO95445 188 aa6.84□□□□□ -1.32
CIITA-201ENST00000324288 CEACAM18A8MTB9 384 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 TMEM183AQ8IXX5 376 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 OR52M1Q8NGK5 317 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 OR10J6PQ8NGY7 276 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 ASB5Q8WWX0 329 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 DLEC1Q9Y238 1755 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 TRAV8-2A0A0B4J237 113 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 SRD5A2P31213 254 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 TCF23Q7RTU1 214 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 RASL10BQ96S79 203 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 ZNF831Q5JPB2 1677 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 TNRC6CQ9HCJ0 1690 aaKnown RBP6.83□□□□□ -1.32
CIITA-201ENST00000324288 PCNX3Q9H6A9 2034 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 PGPA6NDG6 321 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 J3QR06 171 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 HMGA2P52926 109 aa6.83□□□□□ -1.32
CIITA-201ENST00000324288 RPL31P62899 125 aaKnown RBP6.83□□□□□ -1.32
CIITA-201ENST00000324288 SRSF4Q08170 494 aaKnown RBP6.83□□□□□ -1.32
CIITA-201ENST00000324288 MARVELD3Q96A59 401 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms