RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 HIST1H2BOP23527 126 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HIST1H2BBP33778 126 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HIST1H2BDP58876 126 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HIST1H2BCP62807 126 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HIST2H2BEQ16778 126 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 HIST1H2BHQ93079 126 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 C16orf92Q96LL3 132 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HIST1H2BNQ99877 126 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 HIST1H2BMQ99879 126 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 RSPO2Q6UXX9 243 aaPredicted RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 DSPPQ9NZW4 1301 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 TPRX1Q8N7U7 411 aa7.58□□□□□ -1.2
USF3-201ENST00000316407 GEMIN7Q9H840 131 aaKnown RBP7.58□□□□□ -1.2
USF3-201ENST00000316407 C1orf185Q5T7R7 199 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 SPINK14Q6IE38 97 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 PPP1R3EQ9H7J1 279 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 OR11H12B2RN74 326 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 PRRG2O14669 202 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 OR11H1Q8NG94 326 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 OR11H2Q8NH07 326 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 MYOZ1Q9NP98 299 aaPredicted RBP7.57□□□□□ -1.2
USF3-201ENST00000316407 THADAQ6YHU6 1953 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 PGPEP1LA6NFU8 196 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 NPFFR1Q9GZQ6 430 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 KCNE5Q9UJ90 142 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 A0A1W2PPC1 479 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 EML6Q6ZMW3 1958 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 TRBV20OR9-2A0A075B6H5 130 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 PLAURQ03405 335 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 PRR31Q5SQ13 230 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 MOGAT3Q86VF5 341 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 OR10W1Q8NGF6 305 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 GCM2O75603 506 aaPredicted RBP7.57□□□□□ -1.2
USF3-201ENST00000316407 R3HDMLQ9H3Y0 253 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 ST6GALNAC2Q9UJ37 374 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 AMMECR1Q9Y4X0 333 aaPredicted RBP7.57□□□□□ -1.2
USF3-201ENST00000316407 CEACAM5P06731 702 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 DEGS2Q6QHC5 323 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 MEF2CQ06413 473 aaPredicted RBP7.57□□□□□ -1.2
USF3-201ENST00000316407 PNKDQ8N490 385 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 AQP10Q96PS8 301 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 ATXN7O15265 892 aaPredicted RBP7.57□□□□□ -1.2
USF3-201ENST00000316407 SUMO2P61956 95 aaKnown RBP7.57□□□□□ -1.2
USF3-201ENST00000316407 HBBP68871 147 aa7.57□□□□□ -1.2
USF3-201ENST00000316407 KLF13Q9Y2Y9 288 aaPredicted RBP7.57□□□□□ -1.2
USF3-201ENST00000316407 ZFAND6Q6FIF0 208 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 COX11Q9Y6N1 276 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 SUMO3P55854 103 aaPredicted RBP7.56□□□□□ -1.2
USF3-201ENST00000316407 GPR35Q9HC97 309 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 MRGPRX3Q96LB0 322 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 PSMG3Q9BT73 122 aaPredicted RBP7.56□□□□□ -1.2
USF3-201ENST00000316407 QSER1Q2KHR3 1735 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 DSCAML1Q8TD84 2053 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 SLC25A30Q5SVS4 291 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 COPS9Q8WXC6 57 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 CD27P26842 260 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 HYAL1Q12794 435 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 GPR82Q96P67 336 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 NCKAP5O14513 1909 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 SHISA7A6NL88 538 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 UCN2Q96RP3 112 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 CXXC4Q9H2H0 198 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 LOXL2Q9Y4K0 774 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 C19orf67A6NJJ6 358 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 HYPMO75409 117 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 LINC00869P0C866 280 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 CRISPLD2Q9H0B8 497 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 A8MXK9 166 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 SSPNQ14714 243 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 TMEM155Q4W5P6 130 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 F2RL2O00254 374 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 UBR3Q6ZT12 1888 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 LRP5O75197 1615 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 IGLV3-27P01718 113 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 FAM53BQ14153 422 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 TMEM78Q5T7P6 136 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 TAF15Q92804 592 aaKnown RBP eCLIP7.56□□□□□ -1.2
USF3-201ENST00000316407 SCTP09683 121 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 ZNF56Q15929 161 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 GLRX5Q86SX6 157 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 LRRC61Q9BV99 259 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 ZBP1Q9H171 429 aa7.56□□□□□ -1.2
USF3-201ENST00000316407 IGHV5-51A0A0C4DH38 117 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 K7EQS6 105 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 HMGA2P52926 109 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 KIAA0040Q15053 153 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 GOLT1AQ6ZVE7 132 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 ASAH2BP0C7U1 165 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 TMEM211Q6ICI0 200 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 NPVFQ9HCQ7 196 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 TNRC6CQ9HCJ0 1690 aaKnown RBP7.55□□□□□ -1.2
USF3-201ENST00000316407 NRXN3Q9Y4C0 1643 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 MRGPRX1Q96LB2 322 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 CHST5Q9GZS9 411 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 TET1Q8NFU7 2136 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 TRAV8-4A0A0B4J246 113 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 TRAV21A0A0B4J279 112 aa7.55□□□□□ -1.2
USF3-201ENST00000316407 CDCA3Q99618 268 aaPredicted RBP7.55□□□□□ -1.2
USF3-201ENST00000316407 FREM1Q5H8C1 2179 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms