RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SRXN1Q9BYN0 137 aa11.34□□□□□ -0.59
SKA3-201ENST00000298260 AKIRIN1Q9H9L7 192 aaPredicted RBP11.34□□□□□ -0.59
SKA3-201ENST00000298260 COL5A1P20908 1838 aaPredicted RBP11.34□□□□□ -0.59
SKA3-201ENST00000298260 KIR2DS1A0A191URI9 304 aa11.34□□□□□ -0.59
SKA3-201ENST00000298260 TSPOP30536 169 aa11.34□□□□□ -0.59
SKA3-201ENST00000298260 KIR2DS4P43632 304 aa11.34□□□□□ -0.59
SKA3-201ENST00000298260 FXYD3Q14802 87 aa11.34□□□□□ -0.59
SKA3-201ENST00000298260 KIR2DS1Q14954 304 aa11.34□□□□□ -0.59
SKA3-201ENST00000298260 ZNF808Q8N4W9 903 aaPredicted RBP11.34□□□□□ -0.59
SKA3-201ENST00000298260 NAT8BQ9UHF3 227 aa11.34□□□□□ -0.59
SKA3-201ENST00000298260 DOCK10Q96BY6 2186 aa11.34□□□□□ -0.59
SKA3-201ENST00000298260 A0A1W2PS18 150 aa11.33□□□□□ -0.6
SKA3-201ENST00000298260 SLC25A6P12236 298 aa11.33□□□□□ -0.6
SKA3-201ENST00000298260 HOXA4Q00056 320 aaPredicted RBP11.33□□□□□ -0.6
SKA3-201ENST00000298260 VAMP3Q15836 100 aa11.33□□□□□ -0.6
SKA3-201ENST00000298260 ACSF3Q4G176 576 aaPredicted RBP11.33□□□□□ -0.6
SKA3-201ENST00000298260 SLC25A53Q5H9E4 307 aa11.33□□□□□ -0.6
SKA3-201ENST00000298260 KIAA0895LQ68EN5 471 aa11.33□□□□□ -0.6
SKA3-201ENST00000298260 MED12LQ86YW9 2145 aa11.33□□□□□ -0.6
SKA3-201ENST00000298260 ZNF738Q8NE65 137 aa11.33□□□□□ -0.6
SKA3-201ENST00000298260 OR5A2Q8NGI9 324 aa11.33□□□□□ -0.6
SKA3-201ENST00000298260 ARL14EPLP0DKL9 152 aa11.33□□□□□ -0.6
SKA3-201ENST00000298260 GUCD1Q96NT3 240 aa11.33□□□□□ -0.6
SKA3-201ENST00000298260 QTRT1Q9BXR0 403 aaKnown RBP11.33□□□□□ -0.6
SKA3-201ENST00000298260 ODAMA1E959 279 aa11.32□□□□□ -0.6
SKA3-201ENST00000298260 S100GP29377 79 aa11.32□□□□□ -0.6
SKA3-201ENST00000298260 PHF7Q9BWX1 381 aaPredicted RBP11.32□□□□□ -0.6
SKA3-201ENST00000298260 TRAV24A0A0B4J272 114 aa11.32□□□□□ -0.6
SKA3-201ENST00000298260 IGHV2OR16-5A0A0B4J2B6 119 aa11.32□□□□□ -0.6
SKA3-201ENST00000298260 A0A0J9YW62 118 aa11.32□□□□□ -0.6
SKA3-201ENST00000298260 DPRXA6NFQ7 191 aa11.32□□□□□ -0.6
SKA3-201ENST00000298260 K7EP13 123 aa11.32□□□□□ -0.6
SKA3-201ENST00000298260 OR2M7Q8NG81 312 aa11.32□□□□□ -0.6
SKA3-201ENST00000298260 TMPRSS2O15393 492 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 ZNF253O75346 499 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 PIAS2O75928 621 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 CEACAM16Q2WEN9 425 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 MRPL54Q6P161 138 aaKnown RBP11.31□□□□□ -0.6
SKA3-201ENST00000298260 OR10P1Q8NGE3 313 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 GMPPAQ96IJ6 420 aaPredicted RBP11.31□□□□□ -0.6
SKA3-201ENST00000298260 TMEM147Q9BVK8 224 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 YTHDF2Q9Y5A9 579 aaKnown RBP11.31□□□□□ -0.6
SKA3-201ENST00000298260 ASPMQ8IZT6 3477 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 A0A096LPE4 126 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 A0A1W2PPZ6 126 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 PMS2P5A8MQ11 134 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 PSG1P11464 419 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 EPHA8P29322 1005 aaPredicted RBP11.31□□□□□ -0.6
SKA3-201ENST00000298260 SRIP30626 198 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 FGF12P61328 243 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 NIT1Q86X76 327 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 MMD2Q8IY49 270 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 LSM10Q969L4 123 aaKnown RBP11.31□□□□□ -0.6
SKA3-201ENST00000298260 RHBDL1O75783 438 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 ESDP10768 282 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 CA6P23280 308 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 RPL30P62888 115 aaKnown RBP11.31□□□□□ -0.6
SKA3-201ENST00000298260 Q56UQ5 140 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 DRAM1Q8N682 238 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 SPOCK3Q9BQ16 436 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 OR2H1Q9GZK4 316 aa11.31□□□□□ -0.6
SKA3-201ENST00000298260 RNASE7Q9H1E1 156 aaKnown RBP11.31□□□□□ -0.6
SKA3-201ENST00000298260 A0A1W2PPV4 95 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 TOMM40O96008 361 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 CD99P14209 185 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 RPL31P62899 125 aaKnown RBP11.3□□□□□ -0.6
SKA3-201ENST00000298260 DOLPP1Q86YN1 238 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 Q8N7P7 452 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 CLEC7AQ9BXN2 247 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 GP6Q9HCN6 339 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 TMEM38BQ9NVV0 291 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 TIMM9Q9Y5J7 89 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 CACNA1EQ15878 2313 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 EP300Q09472 2414 aaPredicted RBP11.3□□□□□ -0.6
SKA3-201ENST00000298260 IGHV2-70DA0A0C4DH43 119 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 LILRA5A6NI73 299 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 TRAPPC2LH3BP13 241 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 PDE6DO43924 150 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 CA1P00915 261 aaPredicted RBP11.3□□□□□ -0.6
SKA3-201ENST00000298260 LGALS4P56470 323 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 HTD2P86397 168 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 TRIM61Q5EBN2 209 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 SPATA31B1PQ5VZV4 182 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 NEUROG1Q92886 237 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 IL36BQ9NZH7 164 aa11.3□□□□□ -0.6
SKA3-201ENST00000298260 S1PR2O95136 353 aa11.29□□□□□ -0.6
SKA3-201ENST00000298260 NGFP01138 241 aa11.29□□□□□ -0.6
SKA3-201ENST00000298260 Q6ZS49 121 aa11.29□□□□□ -0.6
SKA3-201ENST00000298260 SSMEM1Q8WWF3 244 aa11.29□□□□□ -0.6
SKA3-201ENST00000298260 FOXH1O75593 365 aa11.29□□□□□ -0.6
SKA3-201ENST00000298260 SYNGR4O95473 234 aa11.29□□□□□ -0.6
SKA3-201ENST00000298260 CA2P00918 260 aa11.29□□□□□ -0.6
SKA3-201ENST00000298260 CCL3P10147 92 aa11.29□□□□□ -0.6
SKA3-201ENST00000298260 CLDN15P56746 228 aa11.29□□□□□ -0.6
SKA3-201ENST00000298260 ARF1P84077 181 aaKnown RBP11.29□□□□□ -0.6
SKA3-201ENST00000298260 MIC13Q5XKP0 118 aa11.29□□□□□ -0.6
SKA3-201ENST00000298260 KIR3DL3Q8N743 410 aa11.29□□□□□ -0.6
SKA3-201ENST00000298260 SPACA9Q96E40 222 aaPredicted RBP11.29□□□□□ -0.6
SKA3-201ENST00000298260 BET1LQ9NYM9 111 aa11.29□□□□□ -0.6
SKA3-201ENST00000298260 C19orf25Q9UFG5 118 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms