RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 WNT10AQ9GZT5 417 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 TRGV10A0A0A0MS01 117 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 CA11O75493 328 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 WNT5AP41221 380 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 UCP3P55916 312 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 PLAURQ03405 335 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 RTN4RL2Q86UN3 420 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 SARAFQ96BY9 339 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 TRAV17A0A0B4J275 112 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 NKX6-3A6NJ46 265 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 SPRY3O43610 288 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 LYZL6O75951 148 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 NPY1RP25929 384 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 TEPPQ6URK8 271 aa13.13□□□□□ -0.31
SHH-201ENST00000297261 QTRT1Q9BXR0 403 aaKnown RBP13.13□□□□□ -0.31
SHH-201ENST00000297261 BARX1Q9HBU1 254 aaPredicted RBP13.13□□□□□ -0.31
SHH-201ENST00000297261 ZG16O60844 167 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 FAM87AP0C7U9 286 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 HAND1O96004 215 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 TNFRSF9Q07011 255 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 SSX8Q7RTT4 187 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 LRRC29Q8WV35 223 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 RBM14Q96PK6 669 aaKnown RBP13.12□□□□□ -0.31
SHH-201ENST00000297261 HES7Q9BYE0 225 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 IL36GQ9NZH8 169 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 IL36RNQ9UBH0 155 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 IL19Q9UHD0 177 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 IFITM10A6NMD0 228 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 KLF7O75840 302 aaPredicted RBP13.12□□□□□ -0.31
SHH-201ENST00000297261 ATP1A1-AS1Q5TC04 95 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 OR8G5Q8NG78 346 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 MAP1LC3CQ9BXW4 147 aa13.12□□□□□ -0.31
SHH-201ENST00000297261 SPTAN1Q13813 2472 aaKnown RBP13.12□□□□□ -0.31
SHH-201ENST00000297261 A0A0A6YYD4 124 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 AMBPP02760 352 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 TFPI2P48307 235 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 FAM216AQ8WUB2 273 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 CREBBPQ92793 2442 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 MT-ND6P03923 174 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 CDCP2Q5VXM1 449 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 IGKV1-9A0A0C4DH69 117 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 S100A7P31151 101 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 FOXC1Q12948 553 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 PQLC2Q6ZP29 291 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 BPIFA4PQ86YQ2 179 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 ZCCHC14Q8WYQ9 949 aaKnown RBP13.11□□□□□ -0.31
SHH-201ENST00000297261 TIMM9Q9Y5J7 89 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 ADH4P08319 380 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 UQCRFS1P47985 274 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 OR52L2PQ8NGH6 319 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 OR4S2Q8NH73 311 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 TTTY12Q9BZ98 90 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 ZNF319Q9P2F9 582 aa13.11□□□□□ -0.31
SHH-201ENST00000297261 INTS1Q8N201 2190 aaKnown RBP13.1□□□□□ -0.31
SHH-201ENST00000297261 A6NNC1 897 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 SLC17A3O00476 420 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 MMD2Q8IY49 270 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 OR2T6Q8NHC8 308 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 SFRP2Q96HF1 295 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 LOC102723996A0A087X1L8 192 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 OOEPA6NGQ2 149 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 LRRC30A6NM36 301 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 OR2J3O76001 311 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 SP1P08047 785 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 ARL14EPLP0DKL9 152 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 SOX8P57073 446 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 RPL23P62829 140 aaKnown RBP13.1□□□□□ -0.31
SHH-201ENST00000297261 OR5R1Q8NH85 324 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 GMPPAQ96IJ6 420 aaPredicted RBP13.1□□□□□ -0.31
SHH-201ENST00000297261 PSMG3Q9BT73 122 aaPredicted RBP13.1□□□□□ -0.31
SHH-201ENST00000297261 DECR2Q9NUI1 292 aa13.1□□□□□ -0.31
SHH-201ENST00000297261 IL3RAP26951 378 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 COL8A1P27658 744 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 RNPS1Q15287 305 aaKnown RBP13.09□□□□□ -0.31
SHH-201ENST00000297261 MST1LQ2TV78 715 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 IBA57Q5T440 356 aaKnown RBP13.09□□□□□ -0.31
SHH-201ENST00000297261 ERASQ7Z444 233 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 NPVFQ9HCQ7 196 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 LY6G6EA0A0G2JKS1 128 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 LOC390937A0A1W2PQ73 354 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 GAGE10A6NGK3 116 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 NKX2-8O15522 239 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 SMPD2O60906 423 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 MRPS11P82912 194 aaKnown RBP13.09□□□□□ -0.31
SHH-201ENST00000297261 NHLRC2Q8NBF2 726 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 CPEB3Q8NE35 698 aaKnown RBP13.09□□□□□ -0.31
SHH-201ENST00000297261 OR2V2Q96R30 315 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 OR2J1Q9GZK6 312 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 U3KQA8 63 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 DNPH1O43598 174 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 CEACAM21Q3KPI0 293 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 TMEM56Q96MV1 263 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 NPIPB7O75200 414 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 P01737 135 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 RFPL3SP0C7P2 107 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 PDPNQ86YL7 162 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 OR8A1Q8NGG7 326 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 TM2D1Q9BX74 207 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 DLL3Q9NYJ7 618 aa13.09□□□□□ -0.31
SHH-201ENST00000297261 PMS2P1A4D2B8 440 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms