RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 LHX9Q9NQ69 397 aa10.21□□□□□ -0.78
SHROOM3-201ENST00000296043 SEMA5BQ9P283 1151 aa10.21□□□□□ -0.78
SHROOM3-201ENST00000296043 PSME4Q14997 1843 aa10.21□□□□□ -0.78
SHROOM3-201ENST00000296043 H0Y8X5 98 aa10.21□□□□□ -0.78
SHROOM3-201ENST00000296043 NXPH1P58417 271 aa10.21□□□□□ -0.78
SHROOM3-201ENST00000296043 CACNG7P62955 275 aa10.21□□□□□ -0.78
SHROOM3-201ENST00000296043 NR2C2APQ86WQ0 139 aa10.21□□□□□ -0.78
SHROOM3-201ENST00000296043 RNASEH2CQ8TDP1 164 aaKnown RBP10.21□□□□□ -0.78
SHROOM3-201ENST00000296043 LOC105371242A0A075B767 164 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 PPIAL4CA0A0B4J2A2 164 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 PPIAL4GP0DN37 164 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 OCIAD2Q56VL3 154 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 RNFT1Q5M7Z0 435 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 RPS19BP1Q86WX3 136 aaKnown RBP10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 DOT1LQ8TEK3 1739 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 ALG1L2C9J202 215 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 CEACAM1P13688 526 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 SBF2Q86WG5 1849 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 POC1AQ8NBT0 407 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 OR4X2Q8NGF9 303 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 ASB5Q8WWX0 329 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 LOXL4Q96JB6 756 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 KLHDC2Q9Y2U9 406 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 A0A087WWC5 75 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 TRA2AQ13595 282 aaKnown RBP eCLIP10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 KISS1RQ969F8 398 aaPredicted RBP10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 BOD1L2Q8IYS8 172 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 MRPL43Q8N983 215 aaKnown RBP10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 SLC25A38Q96DW6 304 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 SLC45A1Q9Y2W3 748 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 A8MWV9 139 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 C2orf68Q2NKX9 166 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 NABP2Q9BQ15 211 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 ZNF708P17019 499 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 TCF24Q7RTU0 167 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 PROCRQ9UNN8 238 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 IGKV3OR2-268A0A0C4DH90 116 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 UBE2L6O14933 153 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 DUSP23Q9BVJ7 150 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 LEPP41159 167 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 PAX2Q02962 417 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 TNFSF13O75888 250 aa10.2□□□□□ -0.78
SHROOM3-201ENST00000296043 LCN2P80188 198 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 PHLDA3Q9Y5J5 127 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 ARAP2Q8WZ64 1704 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 SHISA7A6NL88 538 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 H0Y980 276 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 ANOS1P23352 680 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 NANOS3P60323 173 aaKnown RBP10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 RND1Q92730 232 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 FER1L6-AS2Q96M78 137 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 CHST5Q9GZS9 411 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 TOPAZ1Q8N9V7 1692 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 DSPPQ9NZW4 1301 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 EML6Q6ZMW3 1958 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 A0A1W2PPE3 182 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 ZNF32P17041 273 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 ZPLD1Q8TCW7 415 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 CRISPLD2Q9H0B8 497 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 R4GN57 208 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 MUC21A0A0G2JKD1 596 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 MUC21A0A140T8X8 626 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 TNFRSF6BO95407 300 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 MUC21Q5SSG8 566 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 FAM71F2Q6NXP2 309 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 AMMECR1Q9Y4X0 333 aaPredicted RBP10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 PATJQ8NI35 1801 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 SPSB4Q96A44 273 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 PGFP49763 221 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 SSBP2P81877 361 aaPredicted RBP10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 TMEM174Q8WUU8 243 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 TMEM170AQ8WVE7 144 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 NDUFB3O43676 98 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 HLA-DQB1P01920 261 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 RPS11P62280 158 aaKnown RBP eCLIP10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 ZNF479Q96JC4 524 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 RNF122Q9H9V4 155 aa10.19□□□□□ -0.78
SHROOM3-201ENST00000296043 IGHV3OR15-7A0A075B7D8 119 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 IGKV3D-15A0A087WSY6 115 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 KCNE1BA0A087WTH5 132 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 IGKV3-15P01624 115 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 SRP19P09132 144 aaKnown RBP10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 VAX1Q5SQQ9 334 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 C10orf111Q8N326 155 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 HES7Q9BYE0 225 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 PDFQ9HBH1 243 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 TMEM211Q6ICI0 200 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 GAGE12BA1L429 117 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 PNLIPP16233 465 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 DRD1P21728 446 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 TDGF1P3P51864 188 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 SEC11AP67812 179 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 IL36BQ9NZH7 164 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 PSMB11A5LHX3 300 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 NPSP0C0P6 89 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 OR1L8Q8NGR8 309 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 SLC25A10Q9UBX3 287 aaPredicted RBP10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 SS18L2Q9UHA2 77 aa10.18□□□□□ -0.78
SHROOM3-201ENST00000296043 HOXB3P14651 431 aaPredicted RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms