RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SLC31A2O15432 143 aa16.64■□□□□ 0.25
VPS53-201ENST00000291074 OR2C1O95371 312 aa16.64■□□□□ 0.25
VPS53-201ENST00000291074 RAB11AP62491 216 aa16.64■□□□□ 0.25
VPS53-201ENST00000291074 DLK1P80370 383 aa16.64■□□□□ 0.25
VPS53-201ENST00000291074 TFF3Q07654 80 aa16.64■□□□□ 0.25
VPS53-201ENST00000291074 VKORC1L1Q8N0U8 176 aa16.64■□□□□ 0.25
VPS53-201ENST00000291074 Q8TCH9 128 aa16.64■□□□□ 0.25
VPS53-201ENST00000291074 JPT1Q9UK76 154 aa16.64■□□□□ 0.25
VPS53-201ENST00000291074 PTPRZ1P23471 2315 aaPredicted RBP16.64■□□□□ 0.25
VPS53-201ENST00000291074 A0A1W2PPE3 182 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 MAP1LC3B2A6NCE7 125 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 LHBP01229 141 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 CRYABP02511 175 aaKnown RBP16.63■□□□□ 0.25
VPS53-201ENST00000291074 BCL2P10415 239 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 TAGLN2P37802 199 aaKnown RBP16.63■□□□□ 0.25
VPS53-201ENST00000291074 RPP25LQ8N5L8 163 aaKnown RBP16.63■□□□□ 0.25
VPS53-201ENST00000291074 TCTEX1D1Q8N7M0 179 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 PARD6GQ9BYG4 376 aaPredicted RBP16.63■□□□□ 0.25
VPS53-201ENST00000291074 MAP1LC3BQ9GZQ8 125 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 SNRPEP62304 92 aaKnown RBP16.63■□□□□ 0.25
VPS53-201ENST00000291074 TLE1Q04724 770 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 ADAM5Q6NVV9 412 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 C1orf229Q6ZS94 237 aaPredicted RBP16.63■□□□□ 0.25
VPS53-201ENST00000291074 TGIF2LYQ8IUE0 185 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 PPP1R35Q8TAP8 253 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 SFXN3Q9BWM7 321 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 CEACAM8P31997 349 aaPredicted RBP16.63■□□□□ 0.25
VPS53-201ENST00000291074 EIF2S3LQ2VIR3 472 aaKnown RBP16.63■□□□□ 0.25
VPS53-201ENST00000291074 RNF212Q495C1 297 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 SLC16A13Q7RTY0 426 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 DEFB108BQ8NET1 73 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 FAM57AQ8TBR7 257 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 IFI27L2Q9H2X8 130 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 CALYQ9NYX4 217 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 LAMP3Q9UQV4 416 aa16.63■□□□□ 0.25
VPS53-201ENST00000291074 CYB5R3P00387 301 aaPredicted RBP16.62■□□□□ 0.25
VPS53-201ENST00000291074 FGF7P21781 194 aa16.62■□□□□ 0.25
VPS53-201ENST00000291074 CCKARP32238 428 aa16.62■□□□□ 0.25
VPS53-201ENST00000291074 FAM90A2PQ658T7 463 aa16.62■□□□□ 0.25
VPS53-201ENST00000291074 OR10P1Q8NGE3 313 aa16.62■□□□□ 0.25
VPS53-201ENST00000291074 NIPSNAP3BQ9BS92 247 aa16.62■□□□□ 0.25
VPS53-201ENST00000291074 TMEM147Q9BVK8 224 aa16.62■□□□□ 0.25
VPS53-201ENST00000291074 YLPM1P49750 1951 aaKnown RBP16.62■□□□□ 0.25
VPS53-201ENST00000291074 A8MXE2 369 aa16.62■□□□□ 0.25
VPS53-201ENST00000291074 YPEL4Q96NS1 127 aa16.62■□□□□ 0.25
VPS53-201ENST00000291074 SLC25A22Q9H936 323 aa16.62■□□□□ 0.25
VPS53-201ENST00000291074 DYSFO75923 2080 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 YPEL1O60688 119 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 IGHV1-46P01743 117 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 AGAP20933 346 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 ZNF343Q6P1L6 599 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 TVP23CQ96ET8 276 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 YPEL2Q96QA6 119 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 GCM1Q9NP62 436 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 DCAF16Q9NXF7 216 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 CISD1Q9NZ45 108 aaKnown RBP16.61■□□□□ 0.25
VPS53-201ENST00000291074 F2RL2O00254 374 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 DEFA4P12838 97 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 S100A12P80511 92 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 CR1LQ2VPA4 569 aa16.61■□□□□ 0.25
VPS53-201ENST00000291074 PINX1Q96BK5 328 aaKnown RBP16.61■□□□□ 0.25
VPS53-201ENST00000291074 IFNA17P01571 189 aa16.6■□□□□ 0.25
VPS53-201ENST00000291074 CD40P25942 277 aa16.6■□□□□ 0.25
VPS53-201ENST00000291074 TNFAIP6P98066 277 aaPredicted RBP16.6■□□□□ 0.25
VPS53-201ENST00000291074 PRAMEF5Q5TYX0 476 aa16.6■□□□□ 0.25
VPS53-201ENST00000291074 CA5BP1Q8WTZ4 195 aa16.6■□□□□ 0.25
VPS53-201ENST00000291074 ADGRG4Q8IZF6 3080 aa16.6■□□□□ 0.25
VPS53-201ENST00000291074 C17orf58Q2M2W7 97 aa16.6■□□□□ 0.25
VPS53-201ENST00000291074 ZNF561Q8N587 486 aa16.6■□□□□ 0.25
VPS53-201ENST00000291074 LHX4Q969G2 390 aa16.6■□□□□ 0.25
VPS53-201ENST00000291074 CIB3Q96Q77 187 aaPredicted RBP16.6■□□□□ 0.25
VPS53-201ENST00000291074 TMPRSS5Q9H3S3 457 aa16.6■□□□□ 0.25
VPS53-201ENST00000291074 SH3BGRL2Q9UJC5 107 aa16.6■□□□□ 0.25
VPS53-201ENST00000291074 TIMM9Q9Y5J7 89 aa16.6■□□□□ 0.25
VPS53-201ENST00000291074 C15orf62A8K5M9 175 aa16.59■□□□□ 0.25
VPS53-201ENST00000291074 C3orf36Q3SXR2 165 aa16.59■□□□□ 0.25
VPS53-201ENST00000291074 RBMS3Q6XE24 437 aaKnown RBP16.59■□□□□ 0.25
VPS53-201ENST00000291074 SLC39A9Q9NUM3 307 aa16.59■□□□□ 0.25
VPS53-201ENST00000291074 URGCP-MRPS24S4R325 110 aa16.59■□□□□ 0.25
VPS53-201ENST00000291074 TRAV3A0A0B4J244 114 aa16.59■□□□□ 0.25
VPS53-201ENST00000291074 HPRT1P00492 218 aa16.59■□□□□ 0.25
VPS53-201ENST00000291074 RNF7Q9UBF6 113 aa16.59■□□□□ 0.25
VPS53-201ENST00000291074 CGB3P0DN86 165 aa16.58■□□□□ 0.25
VPS53-201ENST00000291074 CGB7P0DN87 165 aa16.58■□□□□ 0.25
VPS53-201ENST00000291074 ATP6V1FQ16864 119 aa16.58■□□□□ 0.25
VPS53-201ENST00000291074 CENPVQ7Z7K6 275 aaPredicted RBP16.58■□□□□ 0.25
VPS53-201ENST00000291074 NPCDR1Q9BY65 106 aa16.58■□□□□ 0.25
VPS53-201ENST00000291074 OR6C3Q9NZP0 311 aa16.58■□□□□ 0.25
VPS53-201ENST00000291074 CEP295Q9C0D2 2601 aa16.58■□□□□ 0.24
VPS53-201ENST00000291074 GATA4P43694 442 aa16.58■□□□□ 0.24
VPS53-201ENST00000291074 KRTCAP3Q53RY4 240 aa16.58■□□□□ 0.24
VPS53-201ENST00000291074 FFAR4Q5NUL3 377 aa16.58■□□□□ 0.24
VPS53-201ENST00000291074 ZNF600Q6ZNG1 722 aa16.58■□□□□ 0.24
VPS53-201ENST00000291074 FAM216BQ8N7L0 139 aa16.58■□□□□ 0.24
VPS53-201ENST00000291074 OR10G4Q8NGN3 311 aa16.58■□□□□ 0.24
VPS53-201ENST00000291074 ABHD17AQ96GS6 310 aa16.58■□□□□ 0.24
VPS53-201ENST00000291074 CCL13Q99616 98 aa16.58■□□□□ 0.24
VPS53-201ENST00000291074 TRBV23-1A0A0A0MS06 115 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 A0A0G2JNJ9 132 aa16.57■□□□□ 0.24
VPS53-201ENST00000291074 NDUFS6O75380 124 aaKnown RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms