RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.81□□□□□ -0.2
CTCF-201ENST00000264010 PRAMEF6Q5VXH4 476 aa13.81□□□□□ -0.2
CTCF-201ENST00000264010 HIST1H2BHQ93079 126 aa13.81□□□□□ -0.2
CTCF-201ENST00000264010 HIST1H2BNQ99877 126 aa13.81□□□□□ -0.2
CTCF-201ENST00000264010 HIST1H2BMQ99879 126 aa13.81□□□□□ -0.2
CTCF-201ENST00000264010 OR2D2Q9H210 308 aa13.81□□□□□ -0.2
CTCF-201ENST00000264010 DOCK10Q96BY6 2186 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 COL6A3P12111 3177 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 BMPR1BO00238 502 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 HSBP1O75506 76 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 KRASP01116 189 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 FAM3BP58499 235 aaPredicted RBP13.8□□□□□ -0.2
CTCF-201ENST00000264010 ZNF816Q0VGE8 651 aaPredicted RBP13.8□□□□□ -0.2
CTCF-201ENST00000264010 ATP6V1FQ16864 119 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 ALKBH6Q3KRA9 238 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 C1orf162Q8NEQ5 155 aaPredicted RBP13.8□□□□□ -0.2
CTCF-201ENST00000264010 BOD1Q96IK1 185 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 PCGF1Q9BSM1 259 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 LYRM2Q9NU23 88 aaPredicted RBP13.8□□□□□ -0.2
CTCF-201ENST00000264010 SHANK1Q9Y566 2161 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 CLEC18AA5D8T8 446 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 MKRN2OSH3BPM6 223 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 GPR12P47775 334 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 VWA1Q6PCB0 445 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 TRAT1Q6PIZ9 186 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 H1FOOQ8IZA3 346 aaPredicted RBP13.8□□□□□ -0.2
CTCF-201ENST00000264010 CLEC18CQ8NCF0 446 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 ZBTB34Q8NCN2 500 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 DMBX1Q8NFW5 382 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 OR2T10Q8NGZ9 312 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 RFESDQ8TAC1 157 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 TAAR6Q96RI8 345 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 TP53TG5Q9Y2B4 290 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 IQCF6A8MYZ5 107 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 RELQ04864 619 aaPredicted RBP13.8□□□□□ -0.2
CTCF-201ENST00000264010 ZNF826PQ6ZT77 177 aa13.8□□□□□ -0.2
CTCF-201ENST00000264010 GRIFINA4D1Z8 144 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 LILRA1O75019 489 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 IGFBP7Q16270 282 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 LDLRAD2Q5SZI1 272 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 UNQ6494/PRO21346Q6UXR6 183 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 GPR146Q96CH1 333 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 HS3ST6Q96QI5 342 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 GINS3Q9BRX5 216 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 CACFD1Q9UGQ2 172 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 DANCRP0C864 163 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 ARL3P36405 182 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 AESQ08117 197 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 C9orf106Q8NAJ2 232 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 Q8NFD4 153 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 DOPEY2Q9Y3R5 2298 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 HPRT1P00492 218 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 OPN1MWP04001 364 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 OPN1MW2P0DN77 364 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 OPN1MW3P0DN78 364 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 IL15RAQ13261 267 aa13.79□□□□□ -0.2
CTCF-201ENST00000264010 ACOT6Q3I5F7 207 aaPredicted RBP13.79□□□□□ -0.2
CTCF-201ENST00000264010 ALKBH7Q9BT30 221 aaPredicted RBP13.79□□□□□ -0.2
CTCF-201ENST00000264010 BSXQ3C1V8 233 aa13.78□□□□□ -0.2
CTCF-201ENST00000264010 OR4D5Q8NGN0 318 aa13.78□□□□□ -0.2
CTCF-201ENST00000264010 Q8WTZ3 238 aa13.78□□□□□ -0.2
CTCF-201ENST00000264010 CTDSP1Q9GZU7 261 aa13.78□□□□□ -0.2
CTCF-201ENST00000264010 FREM1Q5H8C1 2179 aa13.78□□□□□ -0.2
CTCF-201ENST00000264010 SPTBN2O15020 2390 aa13.78□□□□□ -0.2
CTCF-201ENST00000264010 PRRG2O14669 202 aa13.78□□□□□ -0.2
CTCF-201ENST00000264010 FCER1GP30273 86 aa13.78□□□□□ -0.2
CTCF-201ENST00000264010 TMEM241Q24JQ0 296 aa13.78□□□□□ -0.2
CTCF-201ENST00000264010 C1orf185Q5T7R7 199 aa13.78□□□□□ -0.2
CTCF-201ENST00000264010 SH3BGRL3Q9H299 93 aa13.78□□□□□ -0.2
CTCF-201ENST00000264010 CRIM1Q9NZV1 1036 aa13.78□□□□□ -0.2
CTCF-201ENST00000264010 BARX1Q9HBU1 254 aaPredicted RBP13.78□□□□□ -0.2
CTCF-201ENST00000264010 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.78□□□□□ -0.2
CTCF-201ENST00000264010 SPRY3O43610 288 aa13.77□□□□□ -0.2
CTCF-201ENST00000264010 IGHG3P01860 377 aa13.77□□□□□ -0.2
CTCF-201ENST00000264010 FAM157CP0CG43 387 aa13.77□□□□□ -0.2
CTCF-201ENST00000264010 CRISP2P16562 243 aa13.77□□□□□ -0.2
CTCF-201ENST00000264010 CEBPDP49716 269 aaPredicted RBP13.77□□□□□ -0.2
CTCF-201ENST00000264010 KLF3P57682 345 aaPredicted RBP13.77□□□□□ -0.2
CTCF-201ENST00000264010 MED13Q9UHV7 2174 aa13.77□□□□□ -0.2
CTCF-201ENST00000264010 FCN1O00602 326 aa13.77□□□□□ -0.21
CTCF-201ENST00000264010 MPV17P39210 176 aa13.77□□□□□ -0.21
CTCF-201ENST00000264010 OR4A16Q8NH70 328 aa13.77□□□□□ -0.21
CTCF-201ENST00000264010 PSG11Q9UQ72 335 aa13.77□□□□□ -0.21
CTCF-201ENST00000264010 RIF1Q5UIP0 2472 aaKnown RBP13.77□□□□□ -0.21
CTCF-201ENST00000264010 TRBV6-6A0A0A6YYG2 114 aa13.77□□□□□ -0.21
CTCF-201ENST00000264010 IGSF23A1L1A6 192 aa13.77□□□□□ -0.21
CTCF-201ENST00000264010 CECR9P0C854 216 aa13.77□□□□□ -0.21
CTCF-201ENST00000264010 ACSF3Q4G176 576 aaPredicted RBP13.77□□□□□ -0.21
CTCF-201ENST00000264010 C5orf24Q7Z6I8 188 aa13.77□□□□□ -0.21
CTCF-201ENST00000264010 NAT8BQ9UHF3 227 aa13.77□□□□□ -0.21
CTCF-201ENST00000264010 OR5AU1Q8NGC0 362 aa13.76□□□□□ -0.21
CTCF-201ENST00000264010 OR1L6Q8NGR2 347 aa13.76□□□□□ -0.21
CTCF-201ENST00000264010 OR1L1Q8NH94 360 aa13.76□□□□□ -0.21
CTCF-201ENST00000264010 PLPPR1Q8TBJ4 325 aa13.76□□□□□ -0.21
CTCF-201ENST00000264010 FAM234AQ9H0X4 552 aa13.76□□□□□ -0.21
CTCF-201ENST00000264010 PPIAL4AQ9Y536 164 aa13.76□□□□□ -0.21
CTCF-201ENST00000264010 IGHV3-43A0A0B4J1X8 118 aa13.76□□□□□ -0.21
CTCF-201ENST00000264010 IGHV3-43DP0DP04 118 aa13.76□□□□□ -0.21
CTCF-201ENST00000264010 CCKARP32238 428 aa13.76□□□□□ -0.21
CTCF-201ENST00000264010 NUBP1P53384 320 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms