RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ZDHHC8Q9ULC8 765 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 TCF19Q9Y242 345 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 ROS1P08922 2347 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 DLL1O00548 723 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 NAT2P11245 290 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 AGAP20933 346 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 CD40P25942 277 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 LINC00518Q8N0U6 118 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 DPF1Q92782 380 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 GPR61Q9BZJ8 451 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 OR51M1Q9H341 326 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 ZNF430Q9H8G1 570 aaPredicted RBP9.2□□□□□ -0.94
CD44-201ENST00000263398 CDC42EP3Q9UKI2 254 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 CHCHD2Q9Y6H1 151 aaPredicted RBP9.2□□□□□ -0.94
CD44-201ENST00000263398 TMSB15BA0A087X1C1 80 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 A8MXK9 166 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 S1PR2O95136 353 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 CDX1P47902 265 aaPredicted RBP9.2□□□□□ -0.94
CD44-201ENST00000263398 C2orf68Q2NKX9 166 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 SCGB1D4Q6XE38 83 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 BPIFA4PQ86YQ2 179 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 VWCEQ96DN2 955 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 RPRMQ9NS64 109 aa9.2□□□□□ -0.94
CD44-201ENST00000263398 ANKRD36A6QL64 1941 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 A6NDN8 102 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 NDUFA2O43678 99 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 RPL7P18124 248 aaKnown RBP9.19□□□□□ -0.94
CD44-201ENST00000263398 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 PPP1R32Q7Z5V6 425 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 PRNTQ86SH4 94 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 SFXN3Q9BWM7 321 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 ABCA1O95477 2261 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 DICER1Q9UPY3 1922 aaKnown RBP9.19□□□□□ -0.94
CD44-201ENST00000263398 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.19□□□□□ -0.94
CD44-201ENST00000263398 hCG_38984A0A1B0GV85 526 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 IFITM10A6NMD0 228 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 KBTBD11O94819 623 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 C8orf88P0DMB2 117 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 SCN5AQ14524 2016 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 RBM14Q96PK6 669 aaKnown RBP9.19□□□□□ -0.94
CD44-201ENST00000263398 CARHSP1Q9Y2V2 147 aaKnown RBP9.19□□□□□ -0.94
CD44-201ENST00000263398 ACACAQ13085 2346 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 HEATR5BQ9P2D3 2071 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 TGIF2-C20orf24A0A0A6YYL0 155 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 CDK2AP1O14519 115 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 SNRPCP09234 159 aaKnown RBP9.19□□□□□ -0.94
CD44-201ENST00000263398 GLIPR1P48060 266 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 COMPP49747 757 aaPredicted RBP9.19□□□□□ -0.94
CD44-201ENST00000263398 RND2P52198 227 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 HERVK_113P61574 105 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 HOXA4Q00056 320 aaPredicted RBP9.19□□□□□ -0.94
CD44-201ENST00000263398 TMEM30BQ3MIR4 351 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 COL5A1-AS1Q5SY13 56 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 WDR25Q64LD2 544 aaPredicted RBP9.19□□□□□ -0.94
CD44-201ENST00000263398 OR8A1Q8NGG7 326 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 SPSB4Q96A44 273 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 TMEM45BQ96B21 275 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 PARLQ9H300 379 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 IDI2-AS1Q9NZ38 188 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 A0A1B0GTI1 187 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 PGPA6NDG6 321 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 IGLV3-19P01714 112 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 FTH1P19P0C7X4 201 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 UCP1P25874 307 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 GPR6P46095 362 aaPredicted RBP9.19□□□□□ -0.94
CD44-201ENST00000263398 RPL24P83731 157 aaKnown RBP9.19□□□□□ -0.94
CD44-201ENST00000263398 TGIF1Q15583 401 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 OR5P3Q8WZ94 311 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 FGF11Q92914 225 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 GP6Q9HCN6 339 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 DNAJC4Q9NNZ3 241 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 TNFRSF19Q9NS68 423 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 IL17BQ9UHF5 180 aa9.19□□□□□ -0.94
CD44-201ENST00000263398 IGFBP3P17936 291 aaPredicted RBP9.18□□□□□ -0.94
CD44-201ENST00000263398 STPG1Q5TH74 334 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 C19orf24Q9BVV8 132 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 QTRT1Q9BXR0 403 aaKnown RBP9.18□□□□□ -0.94
CD44-201ENST00000263398 IGHV3-72A0A0B4J1Y9 119 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 RNF222A6NCQ9 220 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 CCL21O00585 134 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 SLC35E4Q6ICL7 350 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 HCP5Q6MZN7 132 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 OR4A5Q8NH83 315 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 MRPL37Q9BZE1 423 aaKnown RBP9.18□□□□□ -0.94
CD44-201ENST00000263398 RHBDL1O75783 438 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 CTSSP25774 331 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 BTCP35070 178 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 ATP5IP56385 69 aaPredicted RBP9.18□□□□□ -0.94
CD44-201ENST00000263398 ECSCRQ19T08 205 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 ZNF506Q5JVG8 444 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 ZNF385CQ66K41 422 aaPredicted RBP9.18□□□□□ -0.94
CD44-201ENST00000263398 MYOZ3Q8TDC0 251 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 FBLN5Q9UBX5 448 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 CEP350Q5VT06 3117 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 RALGAPA1Q6GYQ0 2036 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 A0A0G2JMZ2 1700 aa9.18□□□□□ -0.94
CD44-201ENST00000263398 IGKV3-7A0A075B6H7 116 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 IFNL4K9M1U5 179 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 SYNGR3O43761 229 aa9.17□□□□□ -0.94
CD44-201ENST00000263398 CIDEAO60543 219 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms