RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 MBNL2Q5VZF2 373 aaKnown RBP13.7□□□□□ -0.22
HOXD3-201ENST00000249440 EDARADDQ8WWZ3 215 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 PLSCR4Q9NRQ2 329 aa13.7□□□□□ -0.22
HOXD3-201ENST00000249440 IFITM10A6NMD0 228 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 C17orf112F2Z3M2 114 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 PPP1R2P9O14990 202 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 HMGB3O15347 200 aaKnown RBP13.69□□□□□ -0.22
HOXD3-201ENST00000249440 ST8SIA5O15466 376 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 KBTBD11O94819 623 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 SPNS3Q6ZMD2 512 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 MANBALQ9NQG1 85 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 INTS1Q8N201 2190 aaKnown RBP13.69□□□□□ -0.22
HOXD3-201ENST00000249440 PTPRBP23467 1997 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 ELOA3CA0A087WX78 387 aaPredicted RBP13.69□□□□□ -0.22
HOXD3-201ENST00000249440 TRAV17A0A0B4J275 112 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 DEFB108AA8MXU0 73 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 NDUFS6O75380 124 aaKnown RBP13.69□□□□□ -0.22
HOXD3-201ENST00000249440 WISP2O76076 250 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 IGLV1-44P01699 117 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 TRGC1P0CF51 173 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 ADIRFQ15847 76 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 IGFL2Q6UWQ7 119 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 LRRC29Q8WV35 223 aa13.69□□□□□ -0.22
HOXD3-201ENST00000249440 MGAQ8IWI9 3026 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 C15orf65H3BRN8 121 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 PRDX2P32119 198 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 TFF3Q07654 80 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 FOXF2Q12947 444 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 ABHD5Q8WTS1 349 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 IGHV2OR16-5A0A0B4J2B6 119 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 IGHV2-70P01814 119 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 FTH1P19P0C7X4 201 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 GZMHP20718 246 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 LINC00205P59089 165 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 CD177Q8N6Q3 437 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 FRZBQ92765 325 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 RPUSD4Q96CM3 377 aaKnown RBP13.68□□□□□ -0.22
HOXD3-201ENST00000249440 R3HDM4Q96D70 268 aa13.68□□□□□ -0.22
HOXD3-201ENST00000249440 LY86O95711 162 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 GPR12P47775 334 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 EDDM3AQ14507 147 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 BSXQ3C1V8 233 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 RAB24Q969Q5 203 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 SSX3Q99909 188 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 HCFC1P51610 2035 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 CEP295Q9C0D2 2601 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 IGHV1-18A0A0C4DH31 117 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 A0A1B0GWJ7 208 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 MDKP21741 143 aaPredicted RBP13.67□□□□□ -0.22
HOXD3-201ENST00000249440 DUTP33316 252 aaKnown RBP13.67□□□□□ -0.22
HOXD3-201ENST00000249440 RPS16P62249 146 aaKnown RBP13.67□□□□□ -0.22
HOXD3-201ENST00000249440 SPINK9Q5DT21 86 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 PYY3Q5JQD4 70 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 OR4F5Q8NH21 305 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 OR4F4Q96R69 305 aa13.67□□□□□ -0.22
HOXD3-201ENST00000249440 TM4SF5O14894 197 aa13.66□□□□□ -0.22
HOXD3-201ENST00000249440 HPRT1P00492 218 aa13.66□□□□□ -0.22
HOXD3-201ENST00000249440 P2RY6Q15077 328 aa13.66□□□□□ -0.22
HOXD3-201ENST00000249440 LTC4SQ16873 150 aa13.66□□□□□ -0.22
HOXD3-201ENST00000249440 OR2Z1Q8NG97 314 aa13.66□□□□□ -0.22
HOXD3-201ENST00000249440 FAM216AQ8WUB2 273 aa13.66□□□□□ -0.22
HOXD3-201ENST00000249440 DCTN5Q9BTE1 182 aa13.66□□□□□ -0.22
HOXD3-201ENST00000249440 QTRT1Q9BXR0 403 aaKnown RBP13.66□□□□□ -0.22
HOXD3-201ENST00000249440 PARLQ9H300 379 aa13.66□□□□□ -0.22
HOXD3-201ENST00000249440 ZNF71Q9NQZ8 489 aaPredicted RBP13.66□□□□□ -0.22
HOXD3-201ENST00000249440 GNG12Q9UBI6 72 aa13.66□□□□□ -0.22
HOXD3-201ENST00000249440 JPT1Q9UK76 154 aa13.66□□□□□ -0.22
HOXD3-201ENST00000249440 PROCRQ9UNN8 238 aa13.66□□□□□ -0.22
HOXD3-201ENST00000249440 FAM90A9PA6NNJ1 464 aa13.65□□□□□ -0.22
HOXD3-201ENST00000249440 AHRRA9YTQ3 701 aa13.65□□□□□ -0.22
HOXD3-201ENST00000249440 RPL23P62829 140 aaKnown RBP13.65□□□□□ -0.22
HOXD3-201ENST00000249440 SRSF6Q13247 344 aaKnown RBP13.65□□□□□ -0.22
HOXD3-201ENST00000249440 ACOT6Q3I5F7 207 aaPredicted RBP13.65□□□□□ -0.22
HOXD3-201ENST00000249440 HIST3H2BBQ8N257 126 aa13.65□□□□□ -0.22
HOXD3-201ENST00000249440 OR10A7Q8NGE5 316 aa13.65□□□□□ -0.22
HOXD3-201ENST00000249440 PPP1R35Q8TAP8 253 aa13.65□□□□□ -0.22
HOXD3-201ENST00000249440 FCGR3BO75015 233 aa13.65□□□□□ -0.22
HOXD3-201ENST00000249440 SOD3P08294 240 aa13.65□□□□□ -0.22
HOXD3-201ENST00000249440 CD1BP29016 333 aa13.65□□□□□ -0.22
HOXD3-201ENST00000249440 RPP30P78346 268 aaKnown RBP13.65□□□□□ -0.22
HOXD3-201ENST00000249440 MORN2Q502X0 79 aa13.65□□□□□ -0.22
HOXD3-201ENST00000249440 C16orf82Q7Z2V1 217 aa13.65□□□□□ -0.22
HOXD3-201ENST00000249440 GPR61Q9BZJ8 451 aa13.65□□□□□ -0.22
HOXD3-201ENST00000249440 DMRT1Q9Y5R6 373 aa13.65□□□□□ -0.22
HOXD3-201ENST00000249440 C15orf62A8K5M9 175 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 SRRM5B3KS81 715 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 SOX15O60248 233 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 TNFSF13O75888 250 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 OR9G9P0C7N8 305 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 PLA2G5P39877 138 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 CDC34P49427 236 aaPredicted RBP13.64□□□□□ -0.23
HOXD3-201ENST00000249440 AARDQ4LEZ3 155 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 BHLHA15Q7RTS1 189 aaPredicted RBP13.64□□□□□ -0.23
HOXD3-201ENST00000249440 FAM90A1Q86YD7 464 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 FAM169BQ8N8A8 192 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 OR10D4PQ8NGN7 298 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 OPN3Q9H1Y3 402 aaPredicted RBP13.64□□□□□ -0.23
HOXD3-201ENST00000249440 SRD5A3Q9H8P0 318 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 OR6C3Q9NZP0 311 aa13.64□□□□□ -0.23
HOXD3-201ENST00000249440 TRAV20A0A0B4J274 112 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms