RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 HOXB3P14651 431 aaPredicted RBP9.65□□□□□ -0.86
MSH6-201ENST00000234420 CTDSPLO15194 276 aa9.65□□□□□ -0.86
MSH6-201ENST00000234420 TDGF1P13385 188 aa9.65□□□□□ -0.86
MSH6-201ENST00000234420 GALP22466 123 aa9.65□□□□□ -0.86
MSH6-201ENST00000234420 COL10A1Q03692 680 aa9.65□□□□□ -0.86
MSH6-201ENST00000234420 TMEM155Q4W5P6 130 aa9.65□□□□□ -0.86
MSH6-201ENST00000234420 TMEM177Q53S58 311 aa9.65□□□□□ -0.86
MSH6-201ENST00000234420 ZNF362Q5T0B9 420 aaPredicted RBP9.65□□□□□ -0.86
MSH6-201ENST00000234420 OR10AC1Q8NH08 325 aa9.65□□□□□ -0.86
MSH6-201ENST00000234420 C5orf30Q96GV9 206 aa9.65□□□□□ -0.86
MSH6-201ENST00000234420 GPR35Q9HC97 309 aa9.65□□□□□ -0.86
MSH6-201ENST00000234420 HSPB7Q9UBY9 170 aa9.65□□□□□ -0.86
MSH6-201ENST00000234420 TCRBV4S1A1TA0A5B7 111 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 TRDCB7Z8K6 153 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 DHHO43323 396 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 CLPSP04118 112 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 TMEM50BP56557 158 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 C1orf122Q6ZSJ8 110 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 ZPLD1Q8TCW7 415 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 LEAP2Q969E1 77 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 AICDAQ9GZX7 198 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 CCL28Q9NRJ3 127 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 MEF2BQ02080 365 aaPredicted RBP9.65□□□□□ -0.87
MSH6-201ENST00000234420 LRRC75BQ2VPJ9 315 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 TPRX1Q8N7U7 411 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 RNASEH2CQ8TDP1 164 aaKnown RBP9.65□□□□□ -0.87
MSH6-201ENST00000234420 PRELID3AQ96N28 172 aa9.65□□□□□ -0.87
MSH6-201ENST00000234420 RGPD3A6NKT7 1758 aaPredicted RBP9.64□□□□□ -0.87
MSH6-201ENST00000234420 HSPB1P04792 205 aaKnown RBP9.64□□□□□ -0.87
MSH6-201ENST00000234420 SYT8Q8NBV8 401 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 CYSLTR1Q9Y271 337 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 A0A1W2PP11 408 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 PRB4P10163 310 aaPredicted RBP9.64□□□□□ -0.87
MSH6-201ENST00000234420 TPTE2P1Q5T6R2 138 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 SPSB2Q99619 263 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 NHP2Q9NX24 153 aaKnown RBP9.64□□□□□ -0.87
MSH6-201ENST00000234420 TAF1LQ8IZX4 1826 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 PLXND1Q9Y4D7 1925 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 LAMB1P07942 1786 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 TJP1Q07157 1748 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 SSTR5P35346 364 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 HIST1H4AP62805 103 aaKnown RBP9.64□□□□□ -0.87
MSH6-201ENST00000234420 UNQ5815/PRO19632Q6UWF5 114 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 GLMPQ8WWB7 406 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 ZNF107Q9UII5 783 aaPredicted RBP9.64□□□□□ -0.87
MSH6-201ENST00000234420 MPDZO75970 2070 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 GLIPR1P48060 266 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 IFITM2Q01629 132 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 Q8IYB0 196 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 OR1L8Q8NGR8 309 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 FIZ1Q96SL8 496 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 MAP1BP46821 2468 aaKnown RBP9.64□□□□□ -0.87
MSH6-201ENST00000234420 UPK1AO00322 258 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 KLF9Q13886 244 aaPredicted RBP9.64□□□□□ -0.87
MSH6-201ENST00000234420 OCIAD2Q56VL3 154 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 RIPPLY2Q5TAB7 128 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 A0A087WUJ7 227 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 CELA2AP08217 269 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 FAM168AQ92567 244 aa9.64□□□□□ -0.87
MSH6-201ENST00000234420 TRAV8-1A0A0A6YYK1 113 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 SUMO2P61956 95 aaKnown RBP9.63□□□□□ -0.87
MSH6-201ENST00000234420 PRICKLE4Q2TBC4 344 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 TSPAN32Q96QS1 320 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 ZNF257Q9Y2Q1 563 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 SRSF6Q13247 344 aaKnown RBP9.63□□□□□ -0.87
MSH6-201ENST00000234420 FAM19A2Q8N3H0 131 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 MYOM1P52179 1685 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 PSG2P11465 335 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 FOXA3P55318 350 aaPredicted RBP9.63□□□□□ -0.87
MSH6-201ENST00000234420 TRBV7-9A0A0J9YWB2 115 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 PRDX2P32119 198 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 FAM219BQ5XKK7 198 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 hCG_38984A0A1B0GV85 526 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 RRHO14718 337 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 RPL31P62899 125 aaKnown RBP9.63□□□□□ -0.87
MSH6-201ENST00000234420 ST8SIA1Q92185 356 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 DUX3Q96PT4 197 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 LOC105371242A0A075B767 164 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 PPYP01298 95 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 PNLIPP16233 465 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 PRTN3P24158 256 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 NDUFAF3Q9BU61 184 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 ZFP64Q9NPA5 681 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 PXMP4Q9Y6I8 212 aa9.63□□□□□ -0.87
MSH6-201ENST00000234420 SPTY2D1-AS1A0A0U1RR47 76 aa9.62□□□□□ -0.87
MSH6-201ENST00000234420 SAA1P0DJI8 122 aaPredicted RBP9.62□□□□□ -0.87
MSH6-201ENST00000234420 RPL35AP18077 110 aaKnown RBP9.62□□□□□ -0.87
MSH6-201ENST00000234420 SSC4DQ8WTU2 575 aa9.62□□□□□ -0.87
MSH6-201ENST00000234420 SRSF12Q8WXF0 261 aaKnown RBP9.62□□□□□ -0.87
MSH6-201ENST00000234420 QTRT1Q9BXR0 403 aaKnown RBP9.62□□□□□ -0.87
MSH6-201ENST00000234420 BCL2L10Q9HD36 194 aa9.62□□□□□ -0.87
MSH6-201ENST00000234420 FXYD1O00168 92 aa9.62□□□□□ -0.87
MSH6-201ENST00000234420 CEACAM5P06731 702 aa9.62□□□□□ -0.87
MSH6-201ENST00000234420 MRPS11P82912 194 aaKnown RBP9.62□□□□□ -0.87
MSH6-201ENST00000234420 PAX2Q02962 417 aa9.62□□□□□ -0.87
MSH6-201ENST00000234420 TRA2AQ13595 282 aaKnown RBP eCLIP9.62□□□□□ -0.876e-7■■■■■ 32.2
MSH6-201ENST00000234420 STHQ8IWL8 128 aa9.62□□□□□ -0.87
MSH6-201ENST00000234420 PRSS27Q9BQR3 290 aa9.62□□□□□ -0.87
MSH6-201ENST00000234420 PHLDA3Q9Y5J5 127 aa9.62□□□□□ -0.87
MSH6-201ENST00000234420 TMEM229AB2RXF0 380 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms