RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TICRRQ7Z2Z1 1910 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 A0A1W2PQM1 296 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 OR4C45A6NMZ5 311 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 APCSP02743 223 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 CTF1Q16619 201 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 Q6ZT83 130 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 CHST5Q9GZS9 411 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 TOLLIPQ9H0E2 274 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 DLL3Q9NYJ7 618 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 CALYQ9NYX4 217 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 TMSB15BA0A087X1C1 80 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 PSMB11A5LHX3 300 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 J3QKU1 62 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 TM4SF5O14894 197 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 SAP30O75446 220 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 PLAUP00749 431 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 GALP22466 123 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 FCN2Q15485 313 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 TMEM183AQ8IXX5 376 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 LURAP1Q96LR2 239 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 IFITM10A6NMD0 228 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 HBZP02008 142 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 RPS19P39019 145 aaKnown RBP5.3□□□□□ -1.56
SCN1A-217ENST00000637988 OR10G8Q8NGN5 311 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF721Q8TF20 911 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 RAB24Q969Q5 203 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 MAP1LC3AQ9H492 121 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 TMEM74BQ9NUR3 256 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 DOCK11Q5JSL3 2073 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 PTGDSP41222 190 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 ASIPP42127 132 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 HCP5Q6MZN7 132 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 PGLYRP3Q96LB9 341 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF729A6NN14 1252 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-217ENST00000637988 OGG1O15527 345 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 ADRB1P08588 477 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 FABP4P15090 132 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 C11orf87Q6NUJ2 197 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 C9orf40Q8IXQ3 194 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 OR10AC1Q8NH08 325 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 RPRMQ9NS64 109 aa5.3□□□□□ -1.56
SCN1A-217ENST00000637988 A0A0U1RQV5 110 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 SFT2D2O95562 160 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 PPYP01298 95 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 CLEC2LP0C7M8 214 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 GLRXP35754 106 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 LTBRP36941 435 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 WNT3P56703 355 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 FABP5Q01469 135 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 GAPTQ8N292 157 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 MRGPRFQ96AM1 343 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 TBX15Q96SF7 602 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 PRDM6Q9NQX0 595 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 A8MWL6 223 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 LMX1BO60663 402 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 CD5P06127 495 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 CNTFRP26992 372 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF415Q09FC8 603 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 SURF2Q15527 256 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 LSM10Q969L4 123 aaKnown RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 MMP26Q9NRE1 261 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 DPM3Q9P2X0 92 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 COL24A1Q17RW2 1714 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 WDR90Q96KV7 1748 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.29□□□□□ -1.568e-7■■■■□ 21.2
SCN1A-217ENST00000637988 TRGV4A0A0C4DH28 118 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 A0A1W2PPE3 182 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 E9PLN8 166 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 TIMM23O14925 209 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 LEPP41159 167 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 TSPO2Q5TGU0 170 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 FAM27BQ5VT28 67 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 TMEM42Q69YG0 159 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 PPP1R32Q7Z5V6 425 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 VKORC1Q9BQB6 163 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 TMEM106BQ9NUM4 274 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 A0A1W2PNV4 684 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 H7C2G1 150 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 MUC1P15941 1255 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 TMEM255AQ5JRV8 349 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 SEZ6L2Q6UXD5 910 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 ASCL4Q6XD76 172 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 SPNS2Q8IVW8 549 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 KIR3DL3Q8N743 410 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 COL25A1Q9BXS0 654 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 NRN1Q9NPD7 142 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 FOXJ2Q9P0K8 574 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 A0A1W2PQF6 199 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 C7orf66A4D0T2 115 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 GDF9O60383 454 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 B4GALT3O60512 393 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 PGFP49763 221 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 PPP1R27Q86WC6 154 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 SLC25A45Q8N413 288 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 AMER3Q8N944 861 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 RGP1Q92546 391 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 ABHD1Q96SE0 405 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 GDF15Q99988 308 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 PRSS27Q9BQR3 290 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 PRADC1Q9BSG0 188 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms