RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 HIPK2Q9H2X6 1198 aa14.75□□□□□ -0.05
CLN3-262ENST00000637699 KCNK15Q9H427 330 aa14.75□□□□□ -0.05
CLN3-262ENST00000637699 PEF1Q9UBV8 284 aaKnown RBP14.75□□□□□ -0.05
CLN3-262ENST00000637699 ERICH4A6NGS2 130 aa14.74□□□□□ -0.05
CLN3-262ENST00000637699 TRBV12-3P01733 135 aa14.74□□□□□ -0.05
CLN3-262ENST00000637699 ZBTB25P24278 435 aa14.74□□□□□ -0.05
CLN3-262ENST00000637699 MAPK3P27361 379 aaPredicted RBP14.74□□□□□ -0.05
CLN3-262ENST00000637699 SSBP2P81877 361 aaPredicted RBP14.74□□□□□ -0.05
CLN3-262ENST00000637699 PJVKQ0ZLH3 352 aa14.74□□□□□ -0.05
CLN3-262ENST00000637699 IRF3Q14653 427 aa14.74□□□□□ -0.05
CLN3-262ENST00000637699 TATDN3Q17R31 274 aa14.74□□□□□ -0.05
CLN3-262ENST00000637699 Q8N402 240 aa14.74□□□□□ -0.05
CLN3-262ENST00000637699 HDHD3Q9BSH5 251 aaPredicted RBP14.74□□□□□ -0.05
CLN3-262ENST00000637699 PLEKHA3Q9HB20 300 aa14.74□□□□□ -0.05
CLN3-262ENST00000637699 PLEKHJ1Q9NW61 149 aa14.74□□□□□ -0.05
CLN3-262ENST00000637699 SCN3BQ9NY72 215 aa14.74□□□□□ -0.05
CLN3-262ENST00000637699 ZNF221Q9UK13 617 aa14.74□□□□□ -0.05
CLN3-262ENST00000637699 CEPT1Q9Y6K0 416 aa14.74□□□□□ -0.05
CLN3-262ENST00000637699 APOA2P02652 100 aa14.73□□□□□ -0.05
CLN3-262ENST00000637699 SPHARQ15513 63 aa14.73□□□□□ -0.05
CLN3-262ENST00000637699 ACSM3Q53FZ2 586 aa14.73□□□□□ -0.05
CLN3-262ENST00000637699 MOB1BQ7L9L4 216 aa14.73□□□□□ -0.05
CLN3-262ENST00000637699 PDPNQ86YL7 162 aa14.73□□□□□ -0.05
CLN3-262ENST00000637699 TINAGL1Q9GZM7 467 aaPredicted RBP14.73□□□□□ -0.05
CLN3-262ENST00000637699 SHISA3A0PJX4 238 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 SCTP09683 121 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 AADACP22760 399 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 HLA-DRB3P79483 266 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 UNC119Q13432 240 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 DYRK1AQ13627 763 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 RPEL1Q2QD12 228 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 ZNF343Q6P1L6 599 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 BVESQ8NE79 360 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 KCNG3Q8TAE7 436 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 THRSPQ92748 146 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 TM2D1Q9BX74 207 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 DUSP21Q9H596 190 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 COA4Q9NYJ1 87 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 SIGLEC8Q9NYZ4 499 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 AK3Q9UIJ7 227 aa14.72□□□□□ -0.05
CLN3-262ENST00000637699 A0A0A6YYD4 124 aa14.71□□□□□ -0.05
CLN3-262ENST00000637699 M0R1X1 148 aa14.71□□□□□ -0.05
CLN3-262ENST00000637699 APELAP0DMC3 54 aa14.71□□□□□ -0.05
CLN3-262ENST00000637699 LGALS7P47929 136 aa14.71□□□□□ -0.05
CLN3-262ENST00000637699 CD81P60033 236 aa14.71□□□□□ -0.05
CLN3-262ENST00000637699 MED22Q15528 200 aa14.71□□□□□ -0.05
CLN3-262ENST00000637699 RBM48Q5RL73 367 aaKnown RBP14.71□□□□□ -0.05
CLN3-262ENST00000637699 C1orf100Q5SVJ3 147 aa14.71□□□□□ -0.05
CLN3-262ENST00000637699 GLT8D1Q68CQ7 371 aa14.71□□□□□ -0.05
CLN3-262ENST00000637699 LINC00322Q6ZN03 302 aaPredicted RBP14.71□□□□□ -0.05
CLN3-262ENST00000637699 MS4A15Q8N5U1 240 aa14.71□□□□□ -0.05
CLN3-262ENST00000637699 PTX4Q96A99 478 aa14.71□□□□□ -0.05
CLN3-262ENST00000637699 RIMS4Q9H426 269 aaPredicted RBP14.71□□□□□ -0.05
CLN3-262ENST00000637699 SLC35D1Q9NTN3 355 aa14.71□□□□□ -0.05
CLN3-262ENST00000637699 TPRKBQ9Y3C4 175 aa14.71□□□□□ -0.05
CLN3-262ENST00000637699 TRBV6-6A0A0A6YYG2 114 aa14.7□□□□□ -0.06
CLN3-262ENST00000637699 SOCS1O15524 211 aa14.7□□□□□ -0.06
CLN3-262ENST00000637699 IGLV2-23P01705 113 aa14.7□□□□□ -0.06
CLN3-262ENST00000637699 LRRTM1Q86UE6 522 aa14.7□□□□□ -0.06
CLN3-262ENST00000637699 TMEM68Q96MH6 324 aa14.7□□□□□ -0.06
CLN3-262ENST00000637699 TPPPO94811 219 aa14.69□□□□□ -0.06
CLN3-262ENST00000637699 OR2A4O95047 310 aa14.69□□□□□ -0.06
CLN3-262ENST00000637699 CRYGBP07316 175 aa14.69□□□□□ -0.06
CLN3-262ENST00000637699 MECP2P51608 486 aaKnown RBP14.69□□□□□ -0.06
CLN3-262ENST00000637699 LIPKQ5VXJ0 399 aa14.69□□□□□ -0.06
CLN3-262ENST00000637699 CEACAM19Q7Z692 300 aa14.69□□□□□ -0.06
CLN3-262ENST00000637699 DEFB125Q8N687 156 aa14.69□□□□□ -0.06
CLN3-262ENST00000637699 USMG5Q96IX5 58 aa14.69□□□□□ -0.06
CLN3-262ENST00000637699 PHB2Q99623 299 aa14.69□□□□□ -0.06
CLN3-262ENST00000637699 NEURL2Q9BR09 285 aa14.69□□□□□ -0.06
CLN3-262ENST00000637699 Q9N2K0 584 aa14.69□□□□□ -0.06
CLN3-262ENST00000637699 TMEM14DPA8MWL7 114 aa14.68□□□□□ -0.06
CLN3-262ENST00000637699 RBMXL2O75526 392 aaKnown RBP14.68□□□□□ -0.06
CLN3-262ENST00000637699 BRI3O95415 125 aa14.68□□□□□ -0.06
CLN3-262ENST00000637699 CD7P09564 240 aa14.68□□□□□ -0.06
CLN3-262ENST00000637699 CRHBPP24387 322 aa14.68□□□□□ -0.06
CLN3-262ENST00000637699 QRFPP83859 136 aa14.68□□□□□ -0.06
CLN3-262ENST00000637699 IZUMO2Q6UXV1 221 aa14.68□□□□□ -0.06
CLN3-262ENST00000637699 SNAPC3Q92966 411 aa14.68□□□□□ -0.06
CLN3-262ENST00000637699 TMEM203Q969S6 136 aa14.68□□□□□ -0.06
CLN3-262ENST00000637699 LPAR5Q9H1C0 372 aa14.68□□□□□ -0.06
CLN3-262ENST00000637699 RDH8Q9NYR8 311 aa14.68□□□□□ -0.06
CLN3-262ENST00000637699 PEMTQ9UBM1 199 aa14.68□□□□□ -0.06
CLN3-262ENST00000637699 MGAT4AQ9UM21 535 aa14.68□□□□□ -0.06
CLN3-262ENST00000637699 A0A0B4J203 849 aa14.67□□□□□ -0.06
CLN3-262ENST00000637699 IGKV1-6A0A0C4DH72 117 aa14.67□□□□□ -0.06
CLN3-262ENST00000637699 RBMY1BA6NDE4 496 aaKnown RBP14.67□□□□□ -0.06
CLN3-262ENST00000637699 RBMY1EA6NEQ0 496 aaKnown RBP14.67□□□□□ -0.06
CLN3-262ENST00000637699 MSGN1A6NI15 193 aa14.67□□□□□ -0.06
CLN3-262ENST00000637699 RGS10O43665 173 aa14.67□□□□□ -0.06
CLN3-262ENST00000637699 RBMY1DP0C7P1 496 aaKnown RBP14.67□□□□□ -0.06
CLN3-262ENST00000637699 SRMP19623 302 aa14.67□□□□□ -0.06
CLN3-262ENST00000637699 CD300EQ496F6 205 aaPredicted RBP14.67□□□□□ -0.06
CLN3-262ENST00000637699 TMEM91Q6ZNR0 172 aa14.67□□□□□ -0.06
CLN3-262ENST00000637699 OR2K2Q8NGT1 345 aa14.67□□□□□ -0.06
CLN3-262ENST00000637699 PHYHIPQ92561 330 aa14.67□□□□□ -0.06
CLN3-262ENST00000637699 HARBI1Q96MB7 349 aa14.67□□□□□ -0.06
CLN3-262ENST00000637699 WFDC10AQ9H1F0 79 aa14.67□□□□□ -0.06
CLN3-262ENST00000637699 SLC2A8Q9NY64 477 aa14.67□□□□□ -0.06
CLN3-262ENST00000637699 UCHL1P09936 223 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms