RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 BET1LQ9NYM9 111 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 SEMA5BQ9P283 1151 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 hCG_38984A0A1B0GV85 526 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 SYNGR3O43761 229 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 PDE6DO43924 150 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 CCL4P13236 92 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 AESQ08117 197 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 GCSAMLQ5JQS6 135 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 TGIF2LYQ8IUE0 185 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 SLC25A45Q8N413 288 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 TMEM208Q9BTX3 173 aa9.4□□□□□ -0.9
CLN3-244ENST00000636147 SERF1AO75920 110 aa9.4□□□□□ -0.91
CLN3-244ENST00000636147 NMSQ5H8A3 153 aa9.4□□□□□ -0.91
CLN3-244ENST00000636147 KCNE4Q8WWG9 221 aa9.4□□□□□ -0.91
CLN3-244ENST00000636147 TMEM30CPA0ZSE6 113 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 CD1BP29016 333 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 CFHR1Q03591 330 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 CEACAM21Q3KPI0 293 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 SPINK14Q6IE38 97 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 DRAM1Q8N682 238 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 OR5A2Q8NGI9 324 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 HS3ST6Q96QI5 342 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 DERL1Q9BUN8 251 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 OR2J1Q9GZK6 312 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 DEFB127Q9H1M4 99 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 PKDREJQ9NTG1 2253 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 S1PR2O95136 353 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 GZMHP20718 246 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 PSG5Q15238 335 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 TBC1D28Q2M2D7 210 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 SLC24A4Q8NFF2 622 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 OR1L1Q8NH94 360 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 SFRP2Q96HF1 295 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 TPPP3Q9BW30 176 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 PLSCR2Q9NRY7 297 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 NBASA2RRP1 2371 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 DLEU1O43261 78 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 RHBDL1O75783 438 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 OR5G3P0C626 314 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 ARL14EPLP0DKL9 152 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 SRD5A2P31213 254 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 BRS3P32247 399 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 ARR3P36575 388 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 PAFAH1B2P68402 229 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 BEND2Q8NDZ0 799 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 DEFB108BQ8NET1 73 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 CADM4Q8NFZ8 388 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 WDYHV1Q96HA8 205 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 HSD17B10Q99714 261 aaKnown RBP9.39□□□□□ -0.91
CLN3-244ENST00000636147 SF3B5Q9BWJ5 86 aaKnown RBP9.39□□□□□ -0.91
CLN3-244ENST00000636147 TMEM242Q9NWH2 141 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 WIPI2Q9Y4P8 454 aa9.39□□□□□ -0.91
CLN3-244ENST00000636147 PLCE1Q9P212 2302 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 NPSP0C0P6 89 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 MMDQ15546 238 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 NFAM1Q8NET5 270 aaPredicted RBP9.38□□□□□ -0.91
CLN3-244ENST00000636147 R3HDM4Q96D70 268 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 TMEM106BQ9NUM4 274 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 PPIAL4AQ9Y536 164 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 B4E171 279 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 ADMP35318 185 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 TSPAN7P41732 249 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 RND2P52198 227 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 SLC23A3Q6PIS1 610 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 FAM19A2Q8N3H0 131 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 PPP1R35Q8TAP8 253 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 MBD3L1Q8WWY6 194 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 TMEM54Q969K7 222 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 SIGLEC12Q96PQ1 595 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 TAAR6Q96RI8 345 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 S1PR3Q99500 378 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 CTSSP25774 331 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 PRSS8Q16651 343 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 ALKBH6Q3KRA9 238 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 TMEM164Q5U3C3 297 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 STUMQ69YW2 141 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 MOB1BQ7L9L4 216 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 GBGT1Q8N5D6 347 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 DAZAP1Q96EP5 407 aaKnown RBP9.38□□□□□ -0.91
CLN3-244ENST00000636147 KCNIP2Q9NS61 270 aa9.38□□□□□ -0.91
CLN3-244ENST00000636147 CHCHD2Q9Y6H1 151 aaPredicted RBP9.38□□□□□ -0.91
CLN3-244ENST00000636147 FREM1Q5H8C1 2179 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 OR5B21A6NL26 309 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 PFN1P07737 140 aaKnown RBP9.37□□□□□ -0.91
CLN3-244ENST00000636147 VKORC1L1Q8N0U8 176 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 NABP1Q96AH0 204 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 QTRT1Q9BXR0 403 aaKnown RBP9.37□□□□□ -0.91
CLN3-244ENST00000636147 CLEC1BQ9P126 229 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 XIRP2A4UGR9 3374 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 HELTA6NFD8 242 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 OR2H2O95918 312 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 OR10J4P0C629 311 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 COX5BP10606 129 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 OTX1P32242 354 aaPredicted RBP9.37□□□□□ -0.91
CLN3-244ENST00000636147 PLA2G5P39877 138 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 RHOBP62745 196 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 NHLRC2Q8NBF2 726 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 PXMP4Q9Y6I8 212 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 SCO2A0A1W2PP80 73 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 ODAMA1E959 279 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms