RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 OVCH2Q7RTZ1 564 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 CMTM3Q96MX0 182 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 CITED1Q99966 193 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 TINAGL1Q9GZM7 467 aaPredicted RBP10.66□□□□□ -0.7
LINC00540-202ENST00000616974 FBXL15Q9H469 300 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 TAS2R8Q9NYW2 309 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 ZNF221Q9UK13 617 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 SMIM31A0A1B0GVY4 71 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 PPYP01298 95 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 CD28P10747 220 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 NAT1P18440 290 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 DUTP33316 252 aaKnown RBP10.66□□□□□ -0.7
LINC00540-202ENST00000616974 EIF4EBP1Q13541 118 aaPredicted RBP10.66□□□□□ -0.7
LINC00540-202ENST00000616974 PRSS22Q9GZN4 317 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 WNT10AQ9GZT5 417 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 RAB18Q9NP72 206 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 ADAM30Q9UKF2 790 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 GAB2Q9UQC2 676 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 FBXO7Q9Y3I1 522 aa10.66□□□□□ -0.7
LINC00540-202ENST00000616974 TXNL1O43396 289 aa10.65□□□□□ -0.7
LINC00540-202ENST00000616974 TAGLNQ01995 201 aaKnown RBP10.65□□□□□ -0.7
LINC00540-202ENST00000616974 PJVKQ0ZLH3 352 aa10.65□□□□□ -0.7
LINC00540-202ENST00000616974 CDK10Q15131 360 aa10.65□□□□□ -0.7
LINC00540-202ENST00000616974 IDO2Q6ZQW0 420 aa10.65□□□□□ -0.7
LINC00540-202ENST00000616974 ZNF818PQ6ZRF7 136 aa10.65□□□□□ -0.7
LINC00540-202ENST00000616974 DDB2Q92466 427 aa10.65□□□□□ -0.7
LINC00540-202ENST00000616974 RANBP3Q9H6Z4 567 aaPredicted RBP10.65□□□□□ -0.7
LINC00540-202ENST00000616974 DIRAS3O95661 229 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 CD3DP04234 171 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 VDAC2P45880 294 aaPredicted RBP10.64□□□□□ -0.71
LINC00540-202ENST00000616974 LUMP51884 338 aaPredicted RBP10.64□□□□□ -0.71
LINC00540-202ENST00000616974 SSBP2P81877 361 aaPredicted RBP10.64□□□□□ -0.71
LINC00540-202ENST00000616974 IL18Q14116 193 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 ARSJQ5FYB0 599 aaPredicted RBP10.64□□□□□ -0.71
LINC00540-202ENST00000616974 VKORC1L1Q8N0U8 176 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 BVESQ8NE79 360 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 CLCC1Q96S66 551 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 ZNF2Q9BSG1 426 aaPredicted RBP10.64□□□□□ -0.71
LINC00540-202ENST00000616974 FXYD6Q9H0Q3 95 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 NECAP2Q9NVZ3 263 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 TGP01266 2768 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 IGLV2-23P01705 113 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 DYRK1AQ13627 763 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 ZNF79Q15937 498 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 MRGPRG-AS1Q2M3A8 158 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 ZNF645Q8N7E2 425 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 SOSTQ9BQB4 213 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 V9GYH0 126 aa10.64□□□□□ -0.71
LINC00540-202ENST00000616974 PRKDCP78527 4128 aaKnown RBP10.64□□□□□ -0.71
LINC00540-202ENST00000616974 DNAH3Q8TD57 4116 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 OR5H14A6NHG9 310 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 RAMP3O60896 148 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 GNRHRP30968 328 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 FAM71F2Q6NXP2 309 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 C18orf65Q6ZTR6 163 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 C16orf82Q7Z2V1 217 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 CASTOR1Q8WTX7 329 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 MRGPRFQ96AM1 343 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 FAM103A1Q9BTL3 118 aaKnown RBP10.63□□□□□ -0.71
LINC00540-202ENST00000616974 SLC35D1Q9NTN3 355 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 RBMX2Q9Y388 322 aaKnown RBP10.63□□□□□ -0.71
LINC00540-202ENST00000616974 NBR2O15453 112 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 FGF16O43320 207 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 SLC25A17O43808 307 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 CBX5P45973 191 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 OR5H2Q8NGV7 314 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 AKR1E2Q96JD6 320 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 MTFP1Q9UDX5 166 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 WASHC3Q9Y3C0 194 aa10.63□□□□□ -0.71
LINC00540-202ENST00000616974 IGHV7-81A0A0B4J1V7 117 aa10.62□□□□□ -0.71
LINC00540-202ENST00000616974 ADARB2-AS1A8MUL3 147 aa10.62□□□□□ -0.71
LINC00540-202ENST00000616974 G3V318 75 aa10.62□□□□□ -0.71
LINC00540-202ENST00000616974 NDUFA3O95167 84 aa10.62□□□□□ -0.71
LINC00540-202ENST00000616974 CRYZL1O95825 349 aa10.62□□□□□ -0.71
LINC00540-202ENST00000616974 IGHG2P01859 326 aa10.62□□□□□ -0.71
LINC00540-202ENST00000616974 CTXN2P0C2S0 81 aa10.62□□□□□ -0.71
LINC00540-202ENST00000616974 PI3P19957 117 aa10.62□□□□□ -0.71
LINC00540-202ENST00000616974 C5orf64Q2M2E5 130 aa10.62□□□□□ -0.71
LINC00540-202ENST00000616974 AADACL3Q5VUY0 350 aa10.62□□□□□ -0.71
LINC00540-202ENST00000616974 CITED2Q99967 270 aaPredicted RBP10.62□□□□□ -0.71
LINC00540-202ENST00000616974 A0A1W2PRX2 142 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 FCGR3BO75015 233 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 TSPAN15O95858 294 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 RPS16P62249 146 aaKnown RBP10.61□□□□□ -0.71
LINC00540-202ENST00000616974 PSG5Q15238 335 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 DHRS11Q6UWP2 260 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 KCTD9Q7L273 389 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.61□□□□□ -0.71
LINC00540-202ENST00000616974 GIMAP1Q8WWP7 306 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 SLC5A7Q9GZV3 580 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 SCPEP1Q9HB40 452 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 WSB1Q9Y6I7 421 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 A0A1B0GUS0 222 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 ZNF701M0R085 212 aaPredicted RBP10.61□□□□□ -0.71
LINC00540-202ENST00000616974 RRHO14718 337 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 ATP6V0E1O15342 81 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 NPBQ8NG41 125 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 OR5AU1Q8NGC0 362 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 OR51H1Q8NH63 302 aa10.61□□□□□ -0.71
LINC00540-202ENST00000616974 SMIM4Q8WVI0 70 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms