RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 MCHR1Q99705 422 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 CIB1Q99828 191 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 HCAR1Q9BXC0 346 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 HEXA-AS1Q9H8Q6 139 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 TAS2R7Q9NYW3 318 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 USE1Q9NZ43 259 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 VAPAQ9P0L0 249 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 KAAG1Q9UBP8 84 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 CRCT1Q9UGL9 99 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 ATPIF1Q9UII2 106 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 RIMS3Q9UJD0 308 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 APLNQ9ULZ1 77 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 MGAT4AQ9UM21 535 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 SLC35A3Q9Y2D2 325 aa3.15□□□□□ -1.91
LINC00540-201ENST00000611481 IGLV2-18A0A075B6J9 118 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 SMIM23A6NLE4 172 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 IGLL5B9A064 214 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 SGCEO43556 437 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 GYPCP04921 128 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 ACSM4P0C7M7 580 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 RD3LP0DJH9 198 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 ZNF32P17041 273 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 PRPS1L1P21108 318 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 MAGEA3P43357 314 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 GSSP48637 474 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 DYNLT3P51808 116 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 UGT2B15P54855 530 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 TCTAP57738 103 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 DSCR10P59022 87 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 TAS2R60P59551 318 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 UBE2KP61086 200 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 TNFRSF9Q07011 255 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 PDIA2Q13087 525 aaKnown RBP3.14□□□□□ -1.91
LINC00540-201ENST00000611481 UNC119Q13432 240 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 LGALS9BQ3B8N2 356 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 SPIN4Q56A73 249 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 LRRC10Q5BKY1 277 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 LDLRAD2Q5SZI1 272 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 SSX7Q7RTT5 188 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 SPATA12Q7Z6I5 190 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 ABHD12Q8N2K0 398 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 CADM2Q8N3J6 435 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 CLDN22Q8N7P3 220 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 ZNF491Q8N8L2 437 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 OR8G5Q8NG78 346 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 OR5D16Q8NGK9 328 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 OR5B3Q8NH48 314 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 MFSD8Q8NHS3 518 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 C4orf3Q8WVX3 66 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 MALSU1Q96EH3 234 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 OR4C12Q96R67 309 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 COPS4Q9BT78 406 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 DCUN1D5Q9BTE7 237 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 MOB1AQ9H8S9 216 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 SIAEQ9HAT2 523 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 GLTPQ9NZD2 209 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 GOLT1BQ9Y3E0 138 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 HILPDAQ9Y5L2 63 aa3.14□□□□□ -1.91
LINC00540-201ENST00000611481 LRP1Q07954 4544 aaKnown RBP3.14□□□□□ -1.91
LINC00540-201ENST00000611481 IGHV3OR16-12A0A075B7B8 117 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 A0A087WW49 117 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 IGHV3-38A0A0C4DH36 116 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 ANKRD20A5PA0PJZ0 165 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 CENPBD1B2RD01 187 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 SMIM1B2RUZ4 78 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 M0QXV9 152 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 GATCO43716 136 aaKnown RBP3.13□□□□□ -1.91
LINC00540-201ENST00000611481 RPP14O95059 124 aaKnown RBP3.13□□□□□ -1.91
LINC00540-201ENST00000611481 IFNA4P05014 189 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 ARG1P05089 322 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 OR8U9P0C7N5 309 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 PET100P0DJ07 73 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 NQO1P15559 274 aaKnown RBP3.13□□□□□ -1.91
LINC00540-201ENST00000611481 GRPRP30550 384 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 HTR1FP30939 366 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 CEACAM3P40198 252 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 RBM34P42696 430 aaKnown RBP3.13□□□□□ -1.91
LINC00540-201ENST00000611481 CDKN2CP42773 168 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 RANBP1P43487 201 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 OR12D2P58182 307 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 OR2B8PP59922 312 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 KRTAP10-8P60410 259 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 B2MP61769 119 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 CYCSP99999 105 aaKnown RBP3.13□□□□□ -1.91
LINC00540-201ENST00000611481 PSG4Q00888 419 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 ZNF616Q08AN1 781 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 IFFO1Q0D2I5 559 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 ARL6IP1Q15041 203 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 C1orf134Q5TEV5 83 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 ZNF826PQ6ZT77 177 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 SLC36A1Q7Z2H8 476 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 LHFPL3Q86UP9 236 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 FUNDC1Q8IVP5 155 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 VKORC1L1Q8N0U8 176 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 UBL4BQ8N7F7 174 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 RGP1Q92546 391 aaPredicted RBP3.13□□□□□ -1.91
LINC00540-201ENST00000611481 TMEM54Q969K7 222 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 PPP1R14BQ96C90 147 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 OR5B12Q96R08 314 aa3.13□□□□□ -1.91
LINC00540-201ENST00000611481 OR7D2Q96RA2 312 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms