RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 PPP1R1AQ13522 171 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 TMEM30BQ3MIR4 351 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 ABCA11PQ4W5N1 156 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 TMEM128Q5BJH2 165 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 UTF1Q5T230 341 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 LPCAT3Q6P1A2 487 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 LYG2Q86SG7 212 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 CCDC71LQ8N9Z2 235 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 OR11H6Q8NGC7 330 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 OR52L2PQ8NGH6 319 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 OR10V1Q8NGI7 309 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 RFESDQ8TAC1 157 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 ZNF431Q8TF32 576 aaPredicted RBP9.29□□□□□ -0.92
LINC00539-204ENST00000608957 SECTM1Q8WVN6 248 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 ZNF486Q96H40 463 aaPredicted RBP9.29□□□□□ -0.92
LINC00539-204ENST00000608957 RSRP1Q9BUV0 290 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 SLC5A7Q9GZV3 580 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 TOLLIPQ9H0E2 274 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 MED28Q9H204 178 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 GAL3ST2Q9H3Q3 398 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 OR2S2Q9NQN1 319 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 TAS2R3Q9NYW6 316 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 SIGLEC9Q9Y336 463 aa9.29□□□□□ -0.92
LINC00539-204ENST00000608957 IGHV3-43A0A0B4J1X8 118 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 hCG_1809904A0A1W2PP81 198 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 A0A1W2PPE2 198 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 A0A1W2PR64 198 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 A0A1W2PRV1 198 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 BTBD17A6NE02 478 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 SSNA1O43805 119 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 IGHV3-43DP0DP04 118 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 VAMP1P23763 118 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 PPP1CCP36873 323 aaKnown RBP9.28□□□□□ -0.92
LINC00539-204ENST00000608957 RAB13P51153 203 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 LUMP51884 338 aaPredicted RBP9.28□□□□□ -0.92
LINC00539-204ENST00000608957 PIGPP57054 158 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 AANATQ16613 207 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 LTC4SQ16873 150 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 PRAMEF5Q5TYX0 476 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 HIST2H2BDQ6DRA6 164 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 AKAP14Q86UN6 197 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 PARP12Q9H0J9 701 aaKnown RBP9.28□□□□□ -0.92
LINC00539-204ENST00000608957 LINC00574Q9H8X3 128 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 SLC2A9Q9NRM0 540 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 IDI2-AS1Q9NZ38 188 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 GNG12Q9UBI6 72 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 TBL2Q9Y4P3 447 aaKnown RBP9.28□□□□□ -0.92
LINC00539-204ENST00000608957 SESN1Q9Y6P5 492 aa9.28□□□□□ -0.92
LINC00539-204ENST00000608957 IGHV2-26A0A0B4J1V2 119 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 C9orf170A2RU37 121 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 CRYM-AS1A6NIL9 109 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 GPR31O00270 319 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 HSD17B6O14756 317 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 YPEL1O60688 119 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 LOXL3P58215 753 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 RND3P61587 244 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 FCN2Q15485 313 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 PHLDA2Q53GA4 152 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 FBLN7Q53RD9 439 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 ZNF818PQ6ZRF7 136 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 SGPP2Q8IWX5 399 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 OR13D1Q8NGV5 346 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 EDARADDQ8WWZ3 215 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 YPEL2Q96QA6 119 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 NEURL2Q9BR09 285 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 TMEM133Q9H2Q1 129 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 NAA60Q9H7X0 242 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 CCL28Q9NRJ3 127 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 GFOD1Q9NXC2 390 aa9.27□□□□□ -0.93
LINC00539-204ENST00000608957 RBM7Q9Y580 266 aaKnown RBP9.27□□□□□ -0.93
LINC00539-204ENST00000608957 A6NDX4 124 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 RGS11O94810 467 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 SFT2D2O95562 160 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 DUS4LO95620 317 aaKnown RBP9.26□□□□□ -0.93
LINC00539-204ENST00000608957 OR8U9P0C7N5 309 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 SULT1A3P0DMM9 295 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 SULT1A4P0DMN0 295 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 CD34P28906 385 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 GNRHRP30968 328 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 LGALS4P56470 323 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 SUPT4H1P63272 117 aaKnown RBP9.26□□□□□ -0.93
LINC00539-204ENST00000608957 SSX2Q16385 188 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 MORN2Q502X0 79 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 FAM53AQ6NSI3 398 aaPredicted RBP9.26□□□□□ -0.93
LINC00539-204ENST00000608957 C11orf88Q6PI97 169 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 TREML4Q6UXN2 200 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 CMTM1Q8IZ96 169 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 C12orf45Q8N5I9 185 aaPredicted RBP9.26□□□□□ -0.93
LINC00539-204ENST00000608957 BVESQ8NE79 360 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 OR10A7Q8NGE5 316 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 OR52M1Q8NGK5 317 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 OR4P4Q8NGL7 312 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 OR8U1Q8NH10 309 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 CASTOR1Q8WTX7 329 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 RTN4IP1Q8WWV3 396 aaPredicted RBP9.26□□□□□ -0.93
LINC00539-204ENST00000608957 MALSU1Q96EH3 234 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 PHB2Q99623 299 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 TCF19Q9Y242 345 aa9.26□□□□□ -0.93
LINC00539-204ENST00000608957 TEX13DA0A0J9YY54 714 aaPredicted RBP9.25□□□□□ -0.93
LINC00539-204ENST00000608957 ITGB1BP1O14713 200 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms