RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 NMBP08949 121 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 FGF2P09038 288 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 FAM106CPP0CH98 169 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 PGA5P0DJD9 388 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 LYL1P12980 280 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 HIST1H1DP16402 221 aaKnown RBP4.15□□□□□ -1.75
VRK3-226ENST00000602029 PRKACAP17612 351 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 CXCL2P19875 107 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 ZBTB25P24278 435 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 DUSP1P28562 367 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 CD34P28906 385 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 NUP62P37198 522 aaPredicted RBP4.15□□□□□ -1.75
VRK3-226ENST00000602029 PRRX1P54821 245 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 SLC35B1P78383 322 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 LTC4SQ16873 150 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 RNASE12Q5GAN4 147 aaKnown RBP4.15□□□□□ -1.75
VRK3-226ENST00000602029 MINOS1Q5TGZ0 78 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 OR52W1Q6IF63 320 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 EIF5AL1Q6IS14 154 aaKnown RBP4.15□□□□□ -1.75
VRK3-226ENST00000602029 CCDC144NLQ6NUI1 221 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 CRIP3Q6Q6R5 217 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 C10orf99Q6UWK7 81 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 C8orf86Q6ZUL3 223 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 SLC25A26Q70HW3 274 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 C16orf82Q7Z2V1 217 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 ZNF546Q86UE3 836 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 HOGA1Q86XE5 327 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 CALHM1Q8IU99 346 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 ABHD12Q8N2K0 398 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 INO80EQ8NBZ0 244 aaPredicted RBP4.15□□□□□ -1.75
VRK3-226ENST00000602029 OR4D6Q8NGJ1 314 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 OR13C8Q8NGS7 320 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 TERB2Q8NHR7 220 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 COQ8AQ8NI60 647 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 THAP6Q8TBB0 222 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 ZNF596Q8TC21 504 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 TOMM40LQ969M1 308 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 RPEQ96AT9 228 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 BORCS8Q96FH0 119 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 DUX3Q96PT4 197 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 PRR25Q96S07 402 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 TMEM59Q9BXS4 323 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 WNT10AQ9GZT5 417 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 MFFQ9GZY8 342 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 ARL6Q9H0F7 186 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 TMEM133Q9H2Q1 129 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 GAL3ST2Q9H3Q3 398 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 SDHAF2Q9NX18 166 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 RDH8Q9NYR8 311 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 IL36GQ9NZH8 169 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 DPM3Q9P2X0 92 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 HSF4Q9ULV5 492 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 FLVCR2Q9UPI3 526 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 MRPS28Q9Y2Q9 187 aaKnown RBP4.15□□□□□ -1.75
VRK3-226ENST00000602029 MINOS1-NBL1R4GNA1 71 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 V9GYS6 101 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 DOCK11Q5JSL3 2073 aa4.15□□□□□ -1.75
VRK3-226ENST00000602029 FXYD6-FXYD2A0A087WZ82 144 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 C9orf170A2RU37 121 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A10PA6NDY2 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A18PA6NE21 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A16PA6NEW6 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A20PA6NIJ5 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A8PA6NJQ4 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A7PA6NKC0 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 NCBP2LA6PVI3 153 aaKnown RBP4.14□□□□□ -1.75
VRK3-226ENST00000602029 C17orf98A8MV24 154 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A22PA8MWA6 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A12PA8MX19 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A5PA8MXJ8 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A23PA8MXZ1 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 ODF3BA8MYP8 253 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 K7N7A8 449 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 M0QZK8 103 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 MFNGO00587 321 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 HSPB6O14558 160 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 KDM4BO94953 1096 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 IGHV3-7P01780 117 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 RBP4P02753 201 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A15PP0C7V4 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A13PP0C7W8 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A14PP0C7W9 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM90A24PP0C7X0 464 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 NHLRC4P0CG21 123 aaPredicted RBP4.14□□□□□ -1.75
VRK3-226ENST00000602029 ZNF44P15621 663 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 TMEM11P17152 192 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 PRKACBP22694 351 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 DTYMKP23919 212 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 GLP1RP43220 463 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 GNG10P50151 68 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 LUMP51884 338 aaPredicted RBP4.14□□□□□ -1.75
VRK3-226ENST00000602029 RPL23AP62750 156 aaKnown RBP4.14□□□□□ -1.75
VRK3-226ENST00000602029 MEF2CQ06413 473 aaPredicted RBP4.14□□□□□ -1.75
VRK3-226ENST00000602029 UNC119Q13432 240 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 SRSF7Q16629 238 aaKnown RBP eCLIP4.14□□□□□ -1.75
VRK3-226ENST00000602029 CDNFQ49AH0 187 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 PAN3Q58A45 887 aaKnown RBP4.14□□□□□ -1.75
VRK3-226ENST00000602029 FAM76BQ5HYJ3 339 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 LY6G6FQ5SQ64 297 aa4.14□□□□□ -1.75
VRK3-226ENST00000602029 LHFPL1Q86WI0 220 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms