RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 KLRB1Q12918 225 aa16.32■□□□□ 0.2
CLIP3-206ENST00000593074 THNSL2Q86YJ6 484 aa16.32■□□□□ 0.2
CLIP3-206ENST00000593074 CBLN2Q8IUK8 224 aa16.32■□□□□ 0.2
CLIP3-206ENST00000593074 MARCH11A6NNE9 402 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 GPR37O15354 613 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 CYB5R3P00387 301 aaPredicted RBP16.31■□□□□ 0.2
CLIP3-206ENST00000593074 H2AFB1P0C5Y9 115 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 LINC00205P59089 165 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 NCR3LG1Q68D85 454 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 SLC25A24Q6NUK1 477 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 H2BFWTQ7Z2G1 175 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 IFI27L2Q9H2X8 130 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 SMDT1Q9H4I9 107 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 DSCAMO60469 2012 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 ITGB1BP1O14713 200 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 ADIPOQQ15848 244 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 C17orf58Q2M2W7 97 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 LILRB2Q8N423 598 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 WFIKKN1Q96NZ8 548 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 GAFA1Q96PS6 74 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 PSMG3Q9BT73 122 aaPredicted RBP16.31■□□□□ 0.2
CLIP3-206ENST00000593074 RAB9BQ9NP90 201 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 NGBQ9NPG2 151 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 FBXO7Q9Y3I1 522 aa16.31■□□□□ 0.2
CLIP3-206ENST00000593074 OR4A8P0C604 315 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 LRRC75BQ2VPJ9 315 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 DUX4L9Q6RFH8 374 aaPredicted RBP16.3■□□□□ 0.2
CLIP3-206ENST00000593074 SCGB1C1Q8TD33 95 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 FAM234AQ9H0X4 552 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 KIAA1456Q9P272 454 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 A0A1B0GV50 99 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 CD55P08174 381 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 ZNF134P52741 427 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 CCL20P78556 96 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 TLE4Q04727 773 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 TEX36Q5VZQ5 186 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 PLPPR2Q96GM1 343 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 DIRC2Q96SL1 478 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 RSG1Q9BU20 258 aa16.3■□□□□ 0.2
CLIP3-206ENST00000593074 DSCAML1Q8TD84 2053 aa16.29■□□□□ 0.2
CLIP3-206ENST00000593074 RAI1Q7Z5J4 1906 aaPredicted RBP16.29■□□□□ 0.2
CLIP3-206ENST00000593074 KBTBD11-OT1A0A1B0GTJ5 212 aa16.29■□□□□ 0.2
CLIP3-206ENST00000593074 VSTM5A8MXK1 200 aa16.29■□□□□ 0.2
CLIP3-206ENST00000593074 RBFOX2O43251 390 aaKnown RBP eCLIP16.29■□□□□ 0.2
CLIP3-206ENST00000593074 SLC38A11Q08AI6 406 aa16.29■□□□□ 0.2
CLIP3-206ENST00000593074 ZNF788Q6ZQV5 615 aa16.29■□□□□ 0.2
CLIP3-206ENST00000593074 SLC35B3Q9H1N7 401 aa16.29■□□□□ 0.2
CLIP3-206ENST00000593074 ZNF665Q9H7R5 613 aa16.29■□□□□ 0.2
CLIP3-206ENST00000593074 CLN8Q9UBY8 286 aa16.29■□□□□ 0.2
CLIP3-206ENST00000593074 AARDQ4LEZ3 155 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 TCF23Q7RTU1 214 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 KDF1Q8NAX2 398 aaPredicted RBP16.28■□□□□ 0.2
CLIP3-206ENST00000593074 DTD1Q8TEA8 209 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 R3HDM4Q96D70 268 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 OR4C12Q96R67 309 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 GFOD1Q9NXC2 390 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 GAB2Q9UQC2 676 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 TRGV10A0A0A0MS01 117 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 TRAV1-1A0A0B4J248 108 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 FAM90A9PA6NNJ1 464 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 M0R1X1 148 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 HPRT1P00492 218 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 HBE1P02100 147 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 NFYBP25208 207 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 CA7P43166 264 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 RAB7AP51149 207 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 CIB3Q96Q77 187 aaPredicted RBP16.28■□□□□ 0.2
CLIP3-206ENST00000593074 WDR61Q9GZS3 305 aaKnown RBP16.28■□□□□ 0.2
CLIP3-206ENST00000593074 NBEAQ8NFP9 2946 aa16.28■□□□□ 0.2
CLIP3-206ENST00000593074 DIDO1Q9BTC0 2240 aaKnown RBP16.27■□□□□ 0.2
CLIP3-206ENST00000593074 C17orf100A8MU93 164 aa16.27■□□□□ 0.2
CLIP3-206ENST00000593074 ATXN7O15265 892 aaPredicted RBP16.27■□□□□ 0.2
CLIP3-206ENST00000593074 FCGR3BO75015 233 aa16.27■□□□□ 0.2
CLIP3-206ENST00000593074 IRF2P14316 349 aa16.27■□□□□ 0.2
CLIP3-206ENST00000593074 TNFRSF1AP19438 455 aa16.27■□□□□ 0.2
CLIP3-206ENST00000593074 HFEQ30201 348 aa16.27■□□□□ 0.2
CLIP3-206ENST00000593074 RPL39P5Q59GN2 51 aa16.27■□□□□ 0.2
CLIP3-206ENST00000593074 ADAM5Q6NVV9 412 aa16.27■□□□□ 0.2
CLIP3-206ENST00000593074 TGIF2LYQ8IUE0 185 aa16.27■□□□□ 0.2
CLIP3-206ENST00000593074 LINC00574Q9H8X3 128 aa16.27■□□□□ 0.2
CLIP3-206ENST00000593074 NDRG3Q9UGV2 375 aa16.27■□□□□ 0.2
CLIP3-206ENST00000593074 TANC2Q9HCD6 1990 aa16.27■□□□□ 0.19
CLIP3-206ENST00000593074 RBFOX3A6NFN3 312 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 SLC31A2O15432 143 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 ZG16O60844 167 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 GYPAP02724 150 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 CCL8P80075 99 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 SERF2P84101 59 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 ZDHHC16Q969W1 377 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 RBMXL1Q96E39 390 aaKnown RBP16.26■□□□□ 0.19
CLIP3-206ENST00000593074 CCL13Q99616 98 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 RARRES2Q99969 163 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 DCAF16Q9NXF7 216 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 PMS2P5A8MQ11 134 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 UTF1Q5T230 341 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 FAM216BQ8N7L0 139 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.26■□□□□ 0.19
CLIP3-206ENST00000593074 ST6GALNAC3Q8NDV1 305 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 DEFB108BQ8NET1 73 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 SFT2D1Q8WV19 159 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms