RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 FAM90A1Q86YD7 464 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 PIP4P2Q8N4L2 257 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 MBD3L1Q8WWY6 194 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 DCTN5Q9BTE1 182 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 VSIRQ9H7M9 311 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 SEBOXQ9HB31 216 aaPredicted RBP8.41□□□□□ -1.06
VPS53-220ENST00000576149 FAM215AQ9Y5M1 114 aa8.41□□□□□ -1.06
VPS53-220ENST00000576149 TTC28Q96AY4 2481 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 IGKV1D-17A0A075B6S4 117 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 LOC102723971A0A1B0GUV8 181 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 H3BQ15 152 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 IGHV3-13P01766 116 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 ARG1P05089 322 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 SLC38A11Q08AI6 406 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 ZNF726P1Q15940 193 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 PRR14LQ5THK1 2151 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 CYB561D1Q8N8Q1 229 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 S100PBPQ96BU1 408 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 HSD17B10Q99714 261 aaKnown RBP8.4□□□□□ -1.06
VPS53-220ENST00000576149 PSG11Q9UQ72 335 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 LAMP3Q9UQV4 416 aa8.4□□□□□ -1.06
VPS53-220ENST00000576149 EP300Q09472 2414 aaPredicted RBP8.4□□□□□ -1.07
VPS53-220ENST00000576149 A0A1W2PPE2 198 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 LINC00473A8K010 186 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 DEFB108AA8MXU0 73 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 C1orf196B1AJZ1 125 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 RAB29O14966 203 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 FBP1P09467 338 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 EDDM3AQ14507 147 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 RTP5Q14D33 572 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 EIF2S3LQ2VIR3 472 aaKnown RBP8.4□□□□□ -1.07
VPS53-220ENST00000576149 ZNF429Q86V71 674 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 RPRMLQ8N4K4 120 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 GCSAMQ8N6F7 178 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 OR10G4Q8NGN3 311 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 TAF15Q92804 592 aaKnown RBP eCLIP8.4□□□□□ -1.07
VPS53-220ENST00000576149 PINX1Q96BK5 328 aaKnown RBP8.4□□□□□ -1.07
VPS53-220ENST00000576149 SLC35D1Q9NTN3 355 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 WASF3Q9UPY6 502 aa8.4□□□□□ -1.07
VPS53-220ENST00000576149 INTS1Q8N201 2190 aaKnown RBP8.4□□□□□ -1.07
VPS53-220ENST00000576149 M0R1B8 84 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 RAB5AP20339 215 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 GZMHP20718 246 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 AGAP20933 346 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 MAS1LP35410 378 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 GLRXP35754 106 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 LINC00205P59089 165 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 RPS23P62266 143 aaKnown RBP8.39□□□□□ -1.07
VPS53-220ENST00000576149 CR1LQ2VPA4 569 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 C3orf36Q3SXR2 165 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 OR8G2PQ6IF36 304 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 ZNF561Q8N587 486 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 FAM24BQ8N5W8 94 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 RAB39BQ96DA2 213 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 RCC1LQ96I51 464 aaKnown RBP8.39□□□□□ -1.07
VPS53-220ENST00000576149 SNX22Q96L94 193 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 OR2V2Q96R30 315 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 GNG13Q9P2W3 67 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 CLN8Q9UBY8 286 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 TIMM9Q9Y5J7 89 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 ZNF318Q5VUA4 2279 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 UBE2L5PA0A1B0GUS4 154 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 PMS2P5A8MQ11 134 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 MGST3O14880 152 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 CRYAAP02489 173 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 RPL35P42766 123 aaKnown RBP8.39□□□□□ -1.07
VPS53-220ENST00000576149 AKR1D1P51857 326 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 CEBPGP53567 150 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 NKX6-1P78426 367 aaPredicted RBP8.39□□□□□ -1.07
VPS53-220ENST00000576149 ATP6V1FQ16864 119 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 SPRNQ5BIV9 151 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 TMEM41BQ5BJD5 291 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 ZNF787Q6DD87 383 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 LCN15Q6UWW0 184 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 SSX7Q7RTT5 188 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 H2BFWTQ7Z2G1 175 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 CENPVQ7Z7K6 275 aaPredicted RBP8.39□□□□□ -1.07
VPS53-220ENST00000576149 DTD1Q8TEA8 209 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 EDARADDQ8WWZ3 215 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 MEGF10Q96KG7 1140 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 YPEL4Q96NS1 127 aa8.39□□□□□ -1.07
VPS53-220ENST00000576149 CISD1Q9NZ45 108 aaKnown RBP8.39□□□□□ -1.07
VPS53-220ENST00000576149 ZG16O60844 167 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 PROP1O75360 226 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 OR2C1O95371 312 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 LHBP01229 141 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 CD55P08174 381 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 TIMP3P35625 211 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 KLF3P57682 345 aaPredicted RBP8.38□□□□□ -1.07
VPS53-220ENST00000576149 MORN2Q502X0 79 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 MUCL1Q96DR8 90 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 MALSU1Q96EH3 234 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 TVP23CQ96ET8 276 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 CIB3Q96Q77 187 aaPredicted RBP8.38□□□□□ -1.07
VPS53-220ENST00000576149 NIPSNAP3BQ9BS92 247 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 ZNF665Q9H7R5 613 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 JPT1Q9UK76 154 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 IGLV3-9A0A075B6K5 115 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 IGHV3OR15-7A0A075B7D8 119 aa8.38□□□□□ -1.07
VPS53-220ENST00000576149 A0A087WWC5 75 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms