RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PHB2Q99623 299 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 HRH4Q9H3N8 390 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 UBQLN2Q9UHD9 624 aa13.24□□□□□ -0.29
CLK3-227ENST00000570296 ZAR1LA6NP61 321 aa13.23□□□□□ -0.29
CLK3-227ENST00000570296 SLC25A30Q5SVS4 291 aa13.23□□□□□ -0.29
CLK3-227ENST00000570296 OR4A47Q6IF82 309 aa13.23□□□□□ -0.29
CLK3-227ENST00000570296 NECAP1Q8NC96 275 aa13.23□□□□□ -0.29
CLK3-227ENST00000570296 FAM46BQ96A09 425 aa13.23□□□□□ -0.29
CLK3-227ENST00000570296 SPAG8Q99932 426 aaPredicted RBP13.23□□□□□ -0.29
CLK3-227ENST00000570296 PEX16Q9Y5Y5 336 aa13.23□□□□□ -0.29
CLK3-227ENST00000570296 A0A1W2PP11 408 aa13.22□□□□□ -0.29
CLK3-227ENST00000570296 CIB2O75838 187 aa13.22□□□□□ -0.29
CLK3-227ENST00000570296 GLAP06280 429 aa13.22□□□□□ -0.29
CLK3-227ENST00000570296 CRYGBP07316 175 aa13.22□□□□□ -0.29
CLK3-227ENST00000570296 APELAP0DMC3 54 aa13.22□□□□□ -0.29
CLK3-227ENST00000570296 CAPGP40121 348 aa13.22□□□□□ -0.29
CLK3-227ENST00000570296 FAM106AQ4KMX7 169 aa13.22□□□□□ -0.29
CLK3-227ENST00000570296 SLC22A6Q4U2R8 563 aa13.22□□□□□ -0.29
CLK3-227ENST00000570296 ADGRG5Q8IZF4 528 aa13.22□□□□□ -0.29
CLK3-227ENST00000570296 OR11H2Q8NH07 326 aa13.22□□□□□ -0.29
CLK3-227ENST00000570296 MRPL30Q8TCC3 161 aaKnown RBP13.22□□□□□ -0.29
CLK3-227ENST00000570296 MARC2Q969Z3 335 aa13.22□□□□□ -0.29
CLK3-227ENST00000570296 RNF126Q9BV68 326 aa13.22□□□□□ -0.29
CLK3-227ENST00000570296 EXOSC1Q9Y3B2 195 aaKnown RBP13.22□□□□□ -0.29
CLK3-227ENST00000570296 SRRM2Q9UQ35 2752 aaKnown RBP13.21□□□□□ -0.29
CLK3-227ENST00000570296 FAM90A7PA6NKC0 464 aa13.21□□□□□ -0.29
CLK3-227ENST00000570296 IGLV2-23P01705 113 aa13.21□□□□□ -0.29
CLK3-227ENST00000570296 APOA2P02652 100 aa13.21□□□□□ -0.29
CLK3-227ENST00000570296 HOXB6P17509 224 aaKnown RBP13.21□□□□□ -0.29
CLK3-227ENST00000570296 ADMP35318 185 aa13.21□□□□□ -0.29
CLK3-227ENST00000570296 ZNF93P35789 620 aaPredicted RBP13.21□□□□□ -0.29
CLK3-227ENST00000570296 GPR176Q14439 515 aa13.21□□□□□ -0.29
CLK3-227ENST00000570296 ODF3L2Q3SX64 289 aa13.21□□□□□ -0.29
CLK3-227ENST00000570296 ABHD14BQ96IU4 210 aa13.21□□□□□ -0.29
CLK3-227ENST00000570296 AGMATQ9BSE5 352 aa13.21□□□□□ -0.29
CLK3-227ENST00000570296 C6orf62Q9GZU0 229 aaPredicted RBP13.21□□□□□ -0.29
CLK3-227ENST00000570296 CSTL1Q9H114 145 aa13.21□□□□□ -0.29
CLK3-227ENST00000570296 TAS2R4Q9NYW5 299 aa13.21□□□□□ -0.29
CLK3-227ENST00000570296 TRAV10A0A0B4J240 114 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 ZNF320A2RRD8 509 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 TMEM212A6NML5 194 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 MPTX1A8MV57 137 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 ITGB1BP1O14713 200 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 PRH1P02810 166 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 DAPP51397 102 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 MS4A2Q01362 244 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 FLOT2Q14254 428 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 HMGN3Q15651 99 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 C15orf32Q32M92 178 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 GLT8D1Q68CQ7 371 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 Q6ZR54 194 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 DRAXINQ8NBI3 349 aaPredicted RBP13.2□□□□□ -0.3
CLK3-227ENST00000570296 RFKQ969G6 155 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 NRBF2Q96F24 287 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 RIBC2Q9H4K1 309 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 ABRACLQ9P1F3 81 aa13.2□□□□□ -0.3
CLK3-227ENST00000570296 DAPL1A0PJW8 107 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 UBE2QL1A1L167 161 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 J3QLW9 94 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 DEFB4AO15263 64 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 MPPED1O15442 326 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 C8orf88P0DMB2 117 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 ZNF19P17023 458 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 RBMY1FQ15415 496 aaKnown RBP13.19□□□□□ -0.3
CLK3-227ENST00000570296 DDI2Q5TDH0 399 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 C1orf146Q5VVC0 180 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 SPATA24Q86W54 205 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 ZNF383Q8NA42 475 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 OR4A5Q8NH83 315 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 OR5AK2Q8NH90 309 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 IL1F10Q8WWZ1 152 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 C4orf36Q96KX1 117 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 TMEM138Q9NPI0 162 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 POMPQ9Y244 141 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 MYCBP2O75592 4640 aa13.19□□□□□ -0.3
CLK3-227ENST00000570296 AQP12BA6NM10 295 aa13.18□□□□□ -0.3
CLK3-227ENST00000570296 AMBPP02760 352 aa13.18□□□□□ -0.3
CLK3-227ENST00000570296 FUT3P21217 361 aa13.18□□□□□ -0.3
CLK3-227ENST00000570296 ARL3P36405 182 aa13.18□□□□□ -0.3
CLK3-227ENST00000570296 AQP12AQ8IXF9 295 aa13.18□□□□□ -0.3
CLK3-227ENST00000570296 OR14A2Q96R54 314 aa13.18□□□□□ -0.3
CLK3-227ENST00000570296 C5orf66Q9H5L9 145 aa13.18□□□□□ -0.3
CLK3-227ENST00000570296 J3QRE1 110 aa13.17□□□□□ -0.3
CLK3-227ENST00000570296 TSPAN4O14817 238 aa13.17□□□□□ -0.3
CLK3-227ENST00000570296 PROP1O75360 226 aa13.17□□□□□ -0.3
CLK3-227ENST00000570296 S1PR2O95136 353 aa13.17□□□□□ -0.3
CLK3-227ENST00000570296 CANT1Q8WVQ1 401 aa13.17□□□□□ -0.3
CLK3-227ENST00000570296 PDCD1LG2Q9BQ51 273 aa13.17□□□□□ -0.3
CLK3-227ENST00000570296 MRPL27Q9P0M9 148 aaKnown RBP13.17□□□□□ -0.3
CLK3-227ENST00000570296 RPL36Q9Y3U8 105 aaKnown RBP13.17□□□□□ -0.3
CLK3-227ENST00000570296 OR2J3O76001 311 aa13.16□□□□□ -0.3
CLK3-227ENST00000570296 CD2P06729 351 aa13.16□□□□□ -0.3
CLK3-227ENST00000570296 PPP3R1P63098 170 aa13.16□□□□□ -0.3
CLK3-227ENST00000570296 MRGPRG-AS1Q2M3A8 158 aa13.16□□□□□ -0.3
CLK3-227ENST00000570296 SETD9Q8NE22 299 aa13.16□□□□□ -0.3
CLK3-227ENST00000570296 OR5B3Q8NH48 314 aa13.16□□□□□ -0.3
CLK3-227ENST00000570296 CD300LFQ8TDQ1 290 aa13.16□□□□□ -0.3
CLK3-227ENST00000570296 SRSF12Q8WXF0 261 aaKnown RBP13.16□□□□□ -0.3
CLK3-227ENST00000570296 GALP22466 123 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 HLA-DMBP28068 263 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms