RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	ADAD2	Q8NCV1	583 aa	Known RBP	12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	SETD6	Q8TBK2	473 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	C2CD4C	Q8TF44	421 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	GABARAPL3	Q9BY60	117 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	GABARAPL1	Q9H0R8	117 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	MLX	Q9UH92	298 aa		12.01	□□□□□ -0.49
CLK3-223	ENST00000568488	ZNF320	A2RRD8	509 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	FAM90A7P	A6NKC0	464 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	GGCT	O75223	188 aa	Known RBP	12	□□□□□ -0.49
CLK3-223	ENST00000568488	PDCD6	O75340	191 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	T-ENOL	P0DO92	83 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	CTRB1	P17538	263 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	ATP6AP1	Q15904	470 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	MEDAG	Q5VYS4	303 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	CTRB2	Q6GPI1	263 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	UXS1	Q8NBZ7	420 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	C11orf45	Q8TAV5	145 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	FAM46B	Q96A09	425 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	OR14A2	Q96R54	314 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	AGMAT	Q9BSE5	352 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	C11orf54	Q9H0W9	315 aa	Predicted RBP	12	□□□□□ -0.49
CLK3-223	ENST00000568488	SLC35D1	Q9NTN3	355 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	ZNF446	Q9NWS9	450 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	ERVK13-1	Q9NX77	482 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	AASS	Q9UDR5	926 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	UBQLN2	Q9UHD9	624 aa		12	□□□□□ -0.49
CLK3-223	ENST00000568488	PRSS29P	A6NIE9	313 aa		11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	SNTN	A6NMZ2	147 aa		11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	LGALS9	O00182	355 aa		11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	PROP1	O75360	226 aa		11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	IGLV2-23	P01705	113 aa		11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	CRYGB	P07316	175 aa		11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	CEACAM6	P40199	344 aa		11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	RBPMS2	Q6ZRY4	209 aa	Known RBP	11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	AMIGO2	Q86SJ2	522 aa		11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	FBLIM1	Q8WUP2	373 aa		11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	SULT4A1	Q9BR01	284 aa		11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	MFF	Q9GZY8	342 aa		11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	CHMP1A	Q9HD42	196 aa	Predicted RBP	11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	ZNF221	Q9UK13	617 aa		11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	EXOSC1	Q9Y3B2	195 aa	Known RBP	11.99	□□□□□ -0.49
CLK3-223	ENST00000568488	IGLL5	B9A064	214 aa		11.98	□□□□□ -0.49
CLK3-223	ENST00000568488	OR2J3	O76001	311 aa		11.98	□□□□□ -0.49
CLK3-223	ENST00000568488	RPL35A	P18077	110 aa	Known RBP	11.98	□□□□□ -0.49
CLK3-223	ENST00000568488	CAPG	P40121	348 aa		11.98	□□□□□ -0.49
CLK3-223	ENST00000568488	TNXA	Q16473	311 aa		11.98	□□□□□ -0.49
CLK3-223	ENST00000568488	BTNL8	Q6UX41	500 aa		11.98	□□□□□ -0.49
CLK3-223	ENST00000568488	OR1L6	Q8NGR2	347 aa		11.98	□□□□□ -0.49
CLK3-223	ENST00000568488	EDARADD	Q8WWZ3	215 aa		11.98	□□□□□ -0.49
CLK3-223	ENST00000568488		Q96M66	194 aa		11.98	□□□□□ -0.49
CLK3-223	ENST00000568488	FAAP24	Q9BTP7	215 aa		11.98	□□□□□ -0.49
CLK3-223	ENST00000568488	OR1A1	Q9P1Q5	309 aa		11.98	□□□□□ -0.49
CLK3-223	ENST00000568488	CKLF	Q9UBR5	152 aa		11.98	□□□□□ -0.49
CLK3-223	ENST00000568488	POMP	Q9Y244	141 aa		11.98	□□□□□ -0.49
CLK3-223	ENST00000568488	ITGB1BP1	O14713	200 aa		11.97	□□□□□ -0.49
CLK3-223	ENST00000568488	IGFBP3	P17936	291 aa	Predicted RBP	11.97	□□□□□ -0.49
CLK3-223	ENST00000568488	TCTA	P57738	103 aa		11.97	□□□□□ -0.49
CLK3-223	ENST00000568488	SNRPG	P62308	76 aa	Known RBP	11.97	□□□□□ -0.49
CLK3-223	ENST00000568488	SLC38A6	Q8IZM9	456 aa		11.97	□□□□□ -0.49
CLK3-223	ENST00000568488	OR13C5	Q8NGS8	318 aa		11.97	□□□□□ -0.49
CLK3-223	ENST00000568488	HARBI1	Q96MB7	349 aa		11.97	□□□□□ -0.49
CLK3-223	ENST00000568488	NEDD4L	Q96PU5	975 aa		11.97	□□□□□ -0.49
CLK3-223	ENST00000568488	MED4	Q9NPJ6	270 aa		11.97	□□□□□ -0.49
CLK3-223	ENST00000568488	DMRT1	Q9Y5R6	373 aa		11.97	□□□□□ -0.49
CLK3-223	ENST00000568488	HSPG2	P98160	4391 aa		11.97	□□□□□ -0.49
CLK3-223	ENST00000568488	TRBV9	A0A0B4J1U6	114 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	TMEM213	A2RRL7	107 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488		M0R1X1	148 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	SHOX	O15266	292 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	IGHV3-23	P01764	117 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	MAP2K4	P45985	399 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	C15orf32	Q32M92	178 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	FAM106A	Q4KMX7	169 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	XAF1	Q6GPH4	301 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	RPL22L1	Q6P5R6	122 aa	Known RBP	11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	GPHB5	Q86YW7	130 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	SVOP	Q8N4V2	548 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	OR2C3	Q8N628	320 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	GVQW1	Q8N7I0	195 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	NECAP1	Q8NC96	275 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	SRSF12	Q8WXF0	261 aa	Known RBP	11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	ACOT12	Q8WYK0	555 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	AMBN	Q9NP70	447 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	FBXL7	Q9UJT9	491 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	APLN	Q9ULZ1	77 aa		11.96	□□□□□ -0.49
CLK3-223	ENST00000568488	TRAV8-7	A0A075B6U6	113 aa		11.95	□□□□□ -0.5
CLK3-223	ENST00000568488	KIR2DL5B	A0A0G2JN68	375 aa		11.95	□□□□□ -0.5
CLK3-223	ENST00000568488	KIR2DL5B	A0A0G2JPC4	375 aa		11.95	□□□□□ -0.5
CLK3-223	ENST00000568488		A0A1W2PPK0	400 aa		11.95	□□□□□ -0.5
CLK3-223	ENST00000568488	ZBTB25	P24278	435 aa		11.95	□□□□□ -0.5
CLK3-223	ENST00000568488	FCGR2B	P31994	310 aa	Predicted RBP	11.95	□□□□□ -0.5
CLK3-223	ENST00000568488	C6orf201	Q7Z4U5	140 aa		11.95	□□□□□ -0.5
CLK3-223	ENST00000568488	KIR2DL5A	Q8N109	375 aa		11.95	□□□□□ -0.5
CLK3-223	ENST00000568488	KIR2DL5B	Q8NHK3	375 aa		11.95	□□□□□ -0.5
CLK3-223	ENST00000568488	SRRM4	A7MD48	611 aa	Known RBP	11.94	□□□□□ -0.5
CLK3-223	ENST00000568488	ARL3	P36405	182 aa		11.94	□□□□□ -0.5
CLK3-223	ENST00000568488	CBX3	Q13185	183 aa		11.94	□□□□□ -0.5
CLK3-223	ENST00000568488	FAM209B	Q5JX69	171 aa		11.94	□□□□□ -0.5
CLK3-223	ENST00000568488	RARRES2	Q99969	163 aa		11.94	□□□□□ -0.5
CLK3-223	ENST00000568488	TRAV25	A0A0B4J276	109 aa		11.93	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms