RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 ZNF221Q9UK13 617 aa13.35□□□□□ -0.27
CLK3-221ENST00000568139 MGAT4AQ9UM21 535 aa13.35□□□□□ -0.27
CLK3-221ENST00000568139 CEPT1Q9Y6K0 416 aa13.35□□□□□ -0.27
CLK3-221ENST00000568139 A0A0A6YYD4 124 aa13.34□□□□□ -0.27
CLK3-221ENST00000568139 TMEM14DPA8MWL7 114 aa13.34□□□□□ -0.27
CLK3-221ENST00000568139 APOA2P02652 100 aa13.34□□□□□ -0.27
CLK3-221ENST00000568139 SCTP09683 121 aa13.34□□□□□ -0.27
CLK3-221ENST00000568139 CD37P11049 281 aa13.34□□□□□ -0.27
CLK3-221ENST00000568139 DYRK1AQ13627 763 aa13.34□□□□□ -0.27
CLK3-221ENST00000568139 USMG5Q96IX5 58 aa13.34□□□□□ -0.27
CLK3-221ENST00000568139 HDHD3Q9BSH5 251 aaPredicted RBP13.34□□□□□ -0.27
CLK3-221ENST00000568139 KCNK15Q9H427 330 aa13.34□□□□□ -0.27
CLK3-221ENST00000568139 AK3Q9UIJ7 227 aa13.34□□□□□ -0.27
CLK3-221ENST00000568139 OR2A4O95047 310 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 LGALS7P47929 136 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 WNT4P56705 351 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 DEFA5Q01523 94 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 INSL4Q14641 139 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 RPEL1Q2QD12 228 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 ACSM3Q53FZ2 586 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 BVESQ8NE79 360 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 PHYHIPQ92561 330 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 FAM110AQ9BQ89 295 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 PLEKHA3Q9HB20 300 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 Q9N2K0 584 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 SLC35D1Q9NTN3 355 aa13.33□□□□□ -0.28
CLK3-221ENST00000568139 SOCS1O15524 211 aa13.32□□□□□ -0.28
CLK3-221ENST00000568139 TTC23Q5W5X9 447 aa13.32□□□□□ -0.28
CLK3-221ENST00000568139 LAX1Q8IWV1 398 aa13.32□□□□□ -0.28
CLK3-221ENST00000568139 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.32□□□□□ -0.28
CLK3-221ENST00000568139 SETD9Q8NE22 299 aa13.32□□□□□ -0.28
CLK3-221ENST00000568139 LPAR5Q9H1C0 372 aa13.32□□□□□ -0.28
CLK3-221ENST00000568139 PEMTQ9UBM1 199 aa13.32□□□□□ -0.28
CLK3-221ENST00000568139 IGKV1-6A0A0C4DH72 117 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 RBMY1BA6NDE4 496 aaKnown RBP13.31□□□□□ -0.28
CLK3-221ENST00000568139 RBMY1EA6NEQ0 496 aaKnown RBP13.31□□□□□ -0.28
CLK3-221ENST00000568139 ZNF785A8K8V0 405 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 M0R1X1 148 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 MYL12BO14950 172 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 AIREO43918 545 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 RBMXL2O75526 392 aaKnown RBP13.31□□□□□ -0.28
CLK3-221ENST00000568139 BPNT1O95861 308 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 RBMY1DP0C7P1 496 aaKnown RBP13.31□□□□□ -0.28
CLK3-221ENST00000568139 CD81P60033 236 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 MRGPRG-AS1Q2M3A8 158 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 FAM89BQ8N5H3 189 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 NANOGP1Q8N7R0 232 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 CYGBQ8WWM9 190 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 SNAPC3Q92966 411 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 NEURL2Q9BR09 285 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 COA4Q9NYJ1 87 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 HSF4Q9ULV5 492 aa13.31□□□□□ -0.28
CLK3-221ENST00000568139 FOXI3A8MTJ6 420 aaPredicted RBP13.3□□□□□ -0.28
CLK3-221ENST00000568139 TPPPO94811 219 aa13.3□□□□□ -0.28
CLK3-221ENST00000568139 SRMP19623 302 aa13.3□□□□□ -0.28
CLK3-221ENST00000568139 CD300EQ496F6 205 aaPredicted RBP13.3□□□□□ -0.28
CLK3-221ENST00000568139 RBM48Q5RL73 367 aaKnown RBP13.3□□□□□ -0.28
CLK3-221ENST00000568139 LAIR2Q6ISS4 152 aa13.3□□□□□ -0.28
CLK3-221ENST00000568139 MS4A15Q8N5U1 240 aa13.3□□□□□ -0.28
CLK3-221ENST00000568139 RDH8Q9NYR8 311 aa13.3□□□□□ -0.28
CLK3-221ENST00000568139 PSORS1C1Q9UIG5 152 aa13.3□□□□□ -0.28
CLK3-221ENST00000568139 A0A0B4J203 849 aa13.29□□□□□ -0.28
CLK3-221ENST00000568139 SRRM4A7MD48 611 aaKnown RBP13.29□□□□□ -0.28
CLK3-221ENST00000568139 CD7P09564 240 aa13.29□□□□□ -0.28
CLK3-221ENST00000568139 TMEM50BP56557 158 aa13.29□□□□□ -0.28
CLK3-221ENST00000568139 TMEM177Q53S58 311 aa13.29□□□□□ -0.28
CLK3-221ENST00000568139 RNLSQ5VYX0 342 aa13.29□□□□□ -0.28
CLK3-221ENST00000568139 ADAD2Q8NCV1 583 aaKnown RBP13.29□□□□□ -0.28
CLK3-221ENST00000568139 HARBI1Q96MB7 349 aa13.29□□□□□ -0.28
CLK3-221ENST00000568139 URM1Q9BTM9 101 aaKnown RBP13.29□□□□□ -0.28
CLK3-221ENST00000568139 C12orf4Q9NQ89 552 aa13.29□□□□□ -0.28
CLK3-221ENST00000568139 SLC2A8Q9NY64 477 aa13.29□□□□□ -0.28
CLK3-221ENST00000568139 PLECQ15149 4684 aaKnown RBP13.29□□□□□ -0.28
CLK3-221ENST00000568139 MSGN1A6NI15 193 aa13.28□□□□□ -0.28
CLK3-221ENST00000568139 TRDCB7Z8K6 153 aa13.28□□□□□ -0.28
CLK3-221ENST00000568139 BMPR1BO00238 502 aa13.28□□□□□ -0.28
CLK3-221ENST00000568139 TAGLNQ01995 201 aaKnown RBP13.28□□□□□ -0.28
CLK3-221ENST00000568139 DEFB125Q8N687 156 aa13.28□□□□□ -0.28
CLK3-221ENST00000568139 OR6M1Q8NGM8 313 aa13.28□□□□□ -0.28
CLK3-221ENST00000568139 PLCXD1Q9NUJ7 323 aa13.28□□□□□ -0.28
CLK3-221ENST00000568139 SDHAF2Q9NX18 166 aa13.28□□□□□ -0.28
CLK3-221ENST00000568139 SHOXO15266 292 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 OR9G9P0C7N8 305 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 APELAP0DMC3 54 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 SERPINB10P48595 397 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 AHSA2Q719I0 299 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 DHRSXQ8N5I4 330 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 TEX45Q8NA69 505 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 PHB2Q99623 299 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 CMSS1Q9BQ75 279 aaKnown RBP13.27□□□□□ -0.29
CLK3-221ENST00000568139 PECRQ9BY49 303 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 KRTAP17-1Q9BYP8 105 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 SRD5A3Q9H8P0 318 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 AKIP1Q9NQ31 210 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 ZNF230Q9UIE0 474 aaPredicted RBP13.27□□□□□ -0.29
CLK3-221ENST00000568139 ALMS1Q8TCU4 4167 aa13.27□□□□□ -0.29
CLK3-221ENST00000568139 TRBV9A0A0B4J1U6 114 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 FAM223BA6NKX1 122 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 OR11H12B2RN74 326 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 RHOGP84095 191 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms