RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 SLC25A30Q5SVS4 291 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 MEDAGQ5VYS4 303 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 GLIPR1L1Q6UWM5 242 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 GVQW1Q8N7I0 195 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 STPG3Q8N7X2 389 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 C2CD4CQ8TF44 421 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 FBLIM1Q8WUP2 373 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 EDARADDQ8WWZ3 215 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 MUL1Q969V5 352 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 BANF2Q9H503 90 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 MED4Q9NPJ6 270 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 PLA2G2EQ9NZK7 142 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 MLXQ9UH92 298 aa12.46□□□□□ -0.41
CDH3-205ENST00000566808 HSPG2P98160 4391 aa12.46□□□□□ -0.42
CDH3-205ENST00000566808 TRBV9A0A0B4J1U6 114 aa12.45□□□□□ -0.42
CDH3-205ENST00000566808 A8MWP6 167 aa12.45□□□□□ -0.42
CDH3-205ENST00000566808 PPP5D1E7EU14 171 aa12.45□□□□□ -0.42
CDH3-205ENST00000566808 GGCTO75223 188 aaKnown RBP12.45□□□□□ -0.42
CDH3-205ENST00000566808 IGLV2-23P01705 113 aa12.45□□□□□ -0.42
CDH3-205ENST00000566808 CRYGBP07316 175 aa12.45□□□□□ -0.42
CDH3-205ENST00000566808 AWAT2Q6E213 333 aa12.45□□□□□ -0.42
CDH3-205ENST00000566808 ERVK13-1Q9NX77 482 aa12.45□□□□□ -0.42
CDH3-205ENST00000566808 FBXL17Q9UF56 701 aa12.45□□□□□ -0.42
CDH3-205ENST00000566808 SELENOKQ9Y6D0 94 aa12.45□□□□□ -0.42
CDH3-205ENST00000566808 TMEM213A2RRL7 107 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 MPPED1O15442 326 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 CRTAPO75718 401 aaPredicted RBP12.44□□□□□ -0.42
CDH3-205ENST00000566808 BAG2O95816 211 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 IGFBP3P17936 291 aaPredicted RBP12.44□□□□□ -0.42
CDH3-205ENST00000566808 SNRPGP62308 76 aaKnown RBP12.44□□□□□ -0.42
CDH3-205ENST00000566808 MOB1BQ7L9L4 216 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 SVOPQ8N4V2 548 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 NECAP1Q8NC96 275 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 OR1L6Q8NGR2 347 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 FAM46BQ96A09 425 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 HARBI1Q96MB7 349 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 SLC35D1Q9NTN3 355 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 ZNF446Q9NWS9 450 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 CKLFQ9UBR5 152 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 FBXL7Q9UJT9 491 aa12.44□□□□□ -0.42
CDH3-205ENST00000566808 TRAV25A0A0B4J276 109 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 XRCC3O43542 346 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 PROP1O75360 226 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 HLA-AP01891 365 aaKnown RBP12.43□□□□□ -0.42
CDH3-205ENST00000566808 CTRB1P17538 263 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 GTF2A1P52655 376 aaPredicted RBP12.43□□□□□ -0.42
CDH3-205ENST00000566808 NANOS2P60321 138 aaKnown RBP12.43□□□□□ -0.42
CDH3-205ENST00000566808 C15orf32Q32M92 178 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 GLT8D1Q68CQ7 371 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 CTRB2Q6GPI1 263 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 BTNL8Q6UX41 500 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 GPHB5Q86YW7 130 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 JAGN1Q8N5M9 183 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 C11orf45Q8TAV5 145 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 ORAI1Q96D31 301 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 C11orf54Q9H0W9 315 aaPredicted RBP12.43□□□□□ -0.42
CDH3-205ENST00000566808 C11orf68Q9H3H3 251 aaKnown RBP12.43□□□□□ -0.42
CDH3-205ENST00000566808 EXOSC1Q9Y3B2 195 aaKnown RBP12.43□□□□□ -0.42
CDH3-205ENST00000566808 DMRT1Q9Y5R6 373 aa12.43□□□□□ -0.42
CDH3-205ENST00000566808 PRSS29PA6NIE9 313 aa12.42□□□□□ -0.42
CDH3-205ENST00000566808 PRH1P02810 166 aa12.42□□□□□ -0.42
CDH3-205ENST00000566808 T-ENOLP0DO92 83 aa12.42□□□□□ -0.42
CDH3-205ENST00000566808 LINC00205P59089 165 aa12.42□□□□□ -0.42
CDH3-205ENST00000566808 UXS1Q8NBZ7 420 aa12.42□□□□□ -0.42
CDH3-205ENST00000566808 SRSF12Q8WXF0 261 aaKnown RBP12.42□□□□□ -0.42
CDH3-205ENST00000566808 ZNF221Q9UK13 617 aa12.42□□□□□ -0.42
CDH3-205ENST00000566808 OR2C1O95371 312 aa12.41□□□□□ -0.42
CDH3-205ENST00000566808 CCDC58Q4VC31 144 aa12.41□□□□□ -0.42
CDH3-205ENST00000566808 OR4A47Q6IF82 309 aa12.41□□□□□ -0.42
CDH3-205ENST00000566808 RPL22L1Q6P5R6 122 aaKnown RBP12.41□□□□□ -0.42
CDH3-205ENST00000566808 ZNF880Q6PDB4 577 aa12.41□□□□□ -0.42
CDH3-205ENST00000566808 SLC38A6Q8IZM9 456 aa12.41□□□□□ -0.42
CDH3-205ENST00000566808 OR2C3Q8N628 320 aa12.41□□□□□ -0.42
CDH3-205ENST00000566808 PTX4Q96A99 478 aa12.41□□□□□ -0.42
CDH3-205ENST00000566808 OR1A1Q9P1Q5 309 aa12.41□□□□□ -0.42
CDH3-205ENST00000566808 APLNQ9ULZ1 77 aa12.41□□□□□ -0.42
CDH3-205ENST00000566808 POMPQ9Y244 141 aa12.41□□□□□ -0.42
CDH3-205ENST00000566808 TRAV8-7A0A075B6U6 113 aa12.4□□□□□ -0.42
CDH3-205ENST00000566808 M0R1X1 148 aa12.4□□□□□ -0.42
CDH3-205ENST00000566808 NAPSAO96009 420 aa12.4□□□□□ -0.42
CDH3-205ENST00000566808 ZBTB25P24278 435 aa12.4□□□□□ -0.42
CDH3-205ENST00000566808 CBX3Q13185 183 aa12.4□□□□□ -0.42
CDH3-205ENST00000566808 MED22Q15528 200 aa12.4□□□□□ -0.42
CDH3-205ENST00000566808 TNXAQ16473 311 aa12.4□□□□□ -0.42
CDH3-205ENST00000566808 MRGPRG-AS1Q2M3A8 158 aa12.4□□□□□ -0.42
CDH3-205ENST00000566808 XAF1Q6GPH4 301 aa12.4□□□□□ -0.42
CDH3-205ENST00000566808 RBPMS2Q6ZRY4 209 aaKnown RBP12.4□□□□□ -0.42
CDH3-205ENST00000566808 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.4□□□□□ -0.42
CDH3-205ENST00000566808 NEDD4LQ96PU5 975 aa12.4□□□□□ -0.42
CDH3-205ENST00000566808 HERC1Q15751 4861 aa12.39□□□□□ -0.43
CDH3-205ENST00000566808 ZNF320A2RRD8 509 aa12.39□□□□□ -0.43
CDH3-205ENST00000566808 CEACAM6P40199 344 aa12.39□□□□□ -0.43
CDH3-205ENST00000566808 FAM106AQ4KMX7 169 aa12.39□□□□□ -0.43
CDH3-205ENST00000566808 CDH26Q8IXH8 852 aa12.39□□□□□ -0.43
CDH3-205ENST00000566808 MARC2Q969Z3 335 aa12.39□□□□□ -0.43
CDH3-205ENST00000566808 SMIM19Q96E16 107 aa12.39□□□□□ -0.43
CDH3-205ENST00000566808 SPAG8Q99932 426 aaPredicted RBP12.39□□□□□ -0.43
CDH3-205ENST00000566808 CHMP1AQ9HD42 196 aaPredicted RBP12.39□□□□□ -0.43
CDH3-205ENST00000566808 TRBV5-5A0A0J9YX44 114 aa12.38□□□□□ -0.43
CDH3-205ENST00000566808 IGLL5B9A064 214 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms