RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 MMDQ15546 238 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 ETV3LQ6ZN32 361 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 SNX29P2Q8IUI4 249 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 OR5AP2Q8NGF4 316 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 OR52I2Q8NH67 350 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 MYOZ3Q8TDC0 251 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 MRGPRFQ96AM1 343 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 GHITMQ9H3K2 345 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 FBXL15Q9H469 300 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 ZNF580Q9UK33 172 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 RBMX2Q9Y388 322 aaKnown RBP7.73□□□□□ -1.17
CLN3-220ENST00000566040 WASHC3Q9Y3C0 194 aa7.73□□□□□ -1.17
CLN3-220ENST00000566040 RRHO14718 337 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 ARPC1BO15143 372 aaKnown RBP7.72□□□□□ -1.17
CLN3-220ENST00000566040 ATP6V0E1O15342 81 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 PPYP01298 95 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 IGF1P05019 195 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 OR5H8P0DN80 308 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 PPIFP30405 207 aaKnown RBP7.72□□□□□ -1.17
CLN3-220ENST00000566040 FCGR2CP31995 323 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 PRSS3P35030 304 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 MRPS15P82914 257 aaKnown RBP7.72□□□□□ -1.17
CLN3-220ENST00000566040 PJVKQ0ZLH3 352 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 DYRK1AQ13627 763 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 KIAA0141Q14154 515 aaPredicted RBP7.72□□□□□ -1.17
CLN3-220ENST00000566040 CDK10Q15131 360 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 TMEM177Q53S58 311 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 C9orf152Q5JTZ5 239 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 LCNL1Q6ZST4 164 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 SLC35E3Q7Z769 313 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 ZNF329Q86UD4 541 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 STPG2Q8N412 459 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 ZNF645Q8N7E2 425 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 RNF152Q8N8N0 203 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 BVESQ8NE79 360 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 OR5AU1Q8NGC0 362 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 OR8H1Q8NGG4 311 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 PHF21AQ96BD5 680 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 AKR1E2Q96JD6 320 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 GINS4Q9BRT9 223 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 CCL28Q9NRJ3 127 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 EXTL2Q9UBQ6 330 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 KLK11Q9UBX7 282 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 SCOCQ9UIL1 159 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 ZNF221Q9UK13 617 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 NOTCH3Q9UM47 2321 aa7.72□□□□□ -1.17
CLN3-220ENST00000566040 A0A1B0GW64 132 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 NCBP2LA6PVI3 153 aaKnown RBP7.71□□□□□ -1.18
CLN3-220ENST00000566040 G3V318 75 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 FBXO24O75426 580 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 PMP2P02689 132 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 CTXN2P0C2S0 81 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 ZNF735P0CB33 412 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 GNRHRP30968 328 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 HRH1P35367 487 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 CBX5P45973 191 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 LUMP51884 338 aaPredicted RBP7.71□□□□□ -1.18
CLN3-220ENST00000566040 RNASE12Q5GAN4 147 aaKnown RBP7.71□□□□□ -1.18
CLN3-220ENST00000566040 ASPHD1Q5U4P2 390 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 AADACL3Q5VUY0 350 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 DHRS11Q6UWP2 260 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 ZNF818PQ6ZRF7 136 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 LHFPL1Q86WI0 220 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 PDPNQ86YL7 162 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 OR4D10Q8NGI6 311 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 SGMS2Q8NHU3 365 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 GIMAP1Q8WWP7 306 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 MOB3AQ96BX8 217 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 SCPEP1Q9HB40 452 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 SLC35D1Q9NTN3 355 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 MTFP1Q9UDX5 166 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 V9GYH0 126 aa7.71□□□□□ -1.18
CLN3-220ENST00000566040 M0QYG6 137 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 SULT1C2O00338 296 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 RAMP3O60896 148 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 PEX14O75381 377 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 RBBP9O75884 186 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 TPPPO94811 219 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 IGLV1-40P01703 118 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 HLA-DMAP28067 261 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 TNFSF8P32971 234 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 MC5RP33032 325 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 THBS3P49746 956 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 MSMO1Q15800 293 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 ZNF79Q15937 498 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 MZT2AQ6P582 158 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 TREML4Q6UXN2 200 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 AP3S1Q92572 193 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 TINAGL1Q9GZM7 467 aaPredicted RBP7.7□□□□□ -1.18
CLN3-220ENST00000566040 OR51J1Q9H342 316 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 NECAP2Q9NVZ3 263 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 EHFQ9NZC4 300 aa7.7□□□□□ -1.18
CLN3-220ENST00000566040 MRPS7Q9Y2R9 242 aaKnown RBP7.7□□□□□ -1.18
CLN3-220ENST00000566040 PSMB11A5LHX3 300 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 DPPA5A6NC42 116 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 FAM25AB3EWG3 89 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 FAM25CB3EWG5 89 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 FAM25GB3EWG6 89 aa7.69□□□□□ -1.18
CLN3-220ENST00000566040 ZNF701M0R085 212 aaPredicted RBP7.69□□□□□ -1.18
CLN3-220ENST00000566040 AP4M1O00189 453 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms