RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 FBXL15Q9H469 300 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 RAB18Q9NP72 206 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 OR2W1Q9Y3N9 320 aa7.26□□□□□ -1.25
VPS35-206ENST00000565228 IGHV7-81A0A0B4J1V7 117 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 A0A1B0GUS0 222 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 FAM25AB3EWG3 89 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 FAM25CB3EWG5 89 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 FAM25GB3EWG6 89 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 ARPC1BO15143 372 aaKnown RBP7.25□□□□□ -1.25
VPS35-206ENST00000565228 FGF16O43320 207 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 TXNL1O43396 289 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 PEX14O75381 377 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 PPYP01298 95 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 OR5H8P0DN80 308 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 TNFSF8P32971 234 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 PRSS3P35030 304 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 HRH1P35367 487 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 VDAC2P45880 294 aaPredicted RBP7.25□□□□□ -1.25
VPS35-206ENST00000565228 CFHR3Q02985 330 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 PJVKQ0ZLH3 352 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 C19orf54Q5BKX5 351 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 C9orf152Q5JTZ5 239 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 SHISA2Q6UWI4 295 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 DHRS11Q6UWP2 260 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 ZNF329Q86UD4 541 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 BVESQ8NE79 360 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 OR5AP2Q8NGF4 316 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 CITED2Q99967 270 aaPredicted RBP7.25□□□□□ -1.25
VPS35-206ENST00000565228 GINS4Q9BRT9 223 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 TINAGL1Q9GZM7 467 aaPredicted RBP7.25□□□□□ -1.25
VPS35-206ENST00000565228 RSL24D1Q9UHA3 163 aaKnown RBP7.25□□□□□ -1.25
VPS35-206ENST00000565228 ADAM30Q9UKF2 790 aa7.25□□□□□ -1.25
VPS35-206ENST00000565228 RBMX2Q9Y388 322 aaKnown RBP7.25□□□□□ -1.25
VPS35-206ENST00000565228 OR5H14A6NHG9 310 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 NCBP2LA6PVI3 153 aaKnown RBP7.24□□□□□ -1.25
VPS35-206ENST00000565228 G3V318 75 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 M0QYG6 137 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 TNFSF12O43508 249 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 ZNF735P0CB33 412 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 GNRHRP30968 328 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 DYRK1AQ13627 763 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 KIAA0141Q14154 515 aaPredicted RBP7.24□□□□□ -1.25
VPS35-206ENST00000565228 CDK10Q15131 360 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 PSG5Q15238 335 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 MMDQ15546 238 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 C5orf64Q2M2E5 130 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 AADACL3Q5VUY0 350 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 FAAP20Q6NZ36 180 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 ZNF818PQ6ZRF7 136 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 ZNF645Q8N7E2 425 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.24□□□□□ -1.25
VPS35-206ENST00000565228 OR2T6Q8NHC8 308 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 GIMAP1Q8WWP7 306 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 PHF21AQ96BD5 680 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 SLC35D1Q9NTN3 355 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 LIN7CQ9NUP9 197 aaKnown RBP7.24□□□□□ -1.25
VPS35-206ENST00000565228 ZNF221Q9UK13 617 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 V9GYH0 126 aa7.24□□□□□ -1.25
VPS35-206ENST00000565228 RRHO14718 337 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 NBR2O15453 112 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 RGS5O15539 181 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 SOX15O60248 233 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 RAMP3O60896 148 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 CTXN2P0C2S0 81 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 CBX5P45973 191 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 LUMP51884 338 aaPredicted RBP7.23□□□□□ -1.25
VPS35-206ENST00000565228 FXYD4P59646 89 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 ARPC4P59998 168 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 CD83Q01151 205 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 ZNF79Q15937 498 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 TMEM177Q53S58 311 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 OR2B11Q5JQS5 317 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 ASPHD1Q5U4P2 390 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 MZT2AQ6P582 158 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 MCFD2Q8NI22 146 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 SECTM1Q8WVN6 248 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 AP3S1Q92572 193 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 SDHCQ99643 169 aaPredicted RBP7.23□□□□□ -1.25
VPS35-206ENST00000565228 ZNF2Q9BSG1 426 aaPredicted RBP7.23□□□□□ -1.25
VPS35-206ENST00000565228 C6orf62Q9GZU0 229 aaPredicted RBP7.23□□□□□ -1.25
VPS35-206ENST00000565228 NECAP2Q9NVZ3 263 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 EHFQ9NZC4 300 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 MTFP1Q9UDX5 166 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 WASHC3Q9Y3C0 194 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 NOTCH3Q9UM47 2321 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 NBEAL2Q6ZNJ1 2754 aa7.23□□□□□ -1.25
VPS35-206ENST00000565228 A0A1B0GW64 132 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 E7EUB6 86 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 SULT1C2O00338 296 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 ATP6V0E1O15342 81 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 KCNAB3O43448 404 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 CD74P04233 296 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 CD3DP04234 171 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 MYOD1P15172 320 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 PPIFP30405 207 aaKnown RBP7.22□□□□□ -1.25
VPS35-206ENST00000565228 ARHGDIBP52566 201 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 TAGLNQ01995 201 aaKnown RBP7.22□□□□□ -1.25
VPS35-206ENST00000565228 PRR31Q5SQ13 230 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 IDO2Q6ZQW0 420 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 SLC35E3Q7Z769 313 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms