RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.36□□□□□ -1.23
VPS39-207ENST00000563692 LHFPL5Q8TAF8 219 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 C10orf105Q8TEF2 133 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 TCTEX1D2Q8WW35 142 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 H1FXQ92522 213 aaKnown RBP7.36□□□□□ -1.23
VPS39-207ENST00000563692 ZNF714Q96N38 554 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 PLEKHA2Q9HB19 425 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 MIOXQ9UGB7 285 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 NSG2Q9Y328 171 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 PRELID3BQ9Y3B1 194 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 LSM5Q9Y4Y9 91 aaKnown RBP7.36□□□□□ -1.23
VPS39-207ENST00000563692 ABCA1O95477 2261 aa7.36□□□□□ -1.23
VPS39-207ENST00000563692 A0A1B0GW55 424 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 MEX3AA1L020 520 aaKnown RBP7.35□□□□□ -1.23
VPS39-207ENST00000563692 TAAR5O14804 337 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 RAB29O14966 203 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 ST8SIA5O15466 376 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 PPIHO43447 177 aaKnown RBP7.35□□□□□ -1.23
VPS39-207ENST00000563692 DEDDO75618 318 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 LY6HO94772 140 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 DUX4L2P0CJ85 424 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 DUX4L3P0CJ86 424 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 DUX4L4P0CJ87 422 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 DUX4L5P0CJ88 424 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 DUX4L6P0CJ89 424 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 DUX4L7P0CJ90 424 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 OMGP23515 440 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 KIR2DS2P43631 304 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 LPAR6P43657 344 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 NKX2-1P43699 371 aaPredicted RBP7.35□□□□□ -1.23
VPS39-207ENST00000563692 EIF5AP63241 154 aaKnown RBP7.35□□□□□ -1.23
VPS39-207ENST00000563692 TMEM155Q4W5P6 130 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 GPR157Q5UAW9 335 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 CYB5R2Q6BCY4 276 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 DUX4L9Q6RFH8 374 aaPredicted RBP7.35□□□□□ -1.23
VPS39-207ENST00000563692 FAM219AQ8IW50 185 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 FOXRED2Q8IWF2 684 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 SPAG16Q8N0X2 631 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 ZNF680Q8NEM1 530 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 OR8B3Q8NGG8 313 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 OR1S1Q8NH92 325 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 ADTRPQ96IZ2 230 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 OR8B2Q96RD0 313 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 GPHA2Q96T91 129 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 S1PR3Q99500 378 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 ARPC5LQ9BPX5 153 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 AGMATQ9BSE5 352 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 ABHD14AQ9BUJ0 271 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 PARP12Q9H0J9 701 aaKnown RBP7.35□□□□□ -1.23
VPS39-207ENST00000563692 CHODLQ9H9P2 273 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 SDHAF2Q9NX18 166 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 DUX4Q9UBX2 424 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 UBQLN2Q9UHD9 624 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 RPUSD1Q9UJJ7 312 aaKnown RBP7.35□□□□□ -1.23
VPS39-207ENST00000563692 POMT1Q9Y6A1 747 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 DYSFO75923 2080 aa7.35□□□□□ -1.23
VPS39-207ENST00000563692 NSD1Q96L73 2696 aaPredicted RBP7.34□□□□□ -1.23
VPS39-207ENST00000563692 hCG_1809904A0A1W2PP81 198 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 A0A1W2PPE2 198 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 A0A1W2PR64 198 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 A0A1W2PRV1 198 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 F5H0A9 414 aaPredicted RBP7.34□□□□□ -1.23
VPS39-207ENST00000563692 LYNX1G3V0Z9 82 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 H0YIZ8 118 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 K7EPK0 472 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 WRBO00258 174 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 BCL2L11O43521 198 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 IGHV2-70P01814 119 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 MBPP02686 304 aaPredicted RBP7.34□□□□□ -1.23
VPS39-207ENST00000563692 LYNX1P0DP58 116 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 MMP9P14780 707 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 RPL12P30050 165 aaKnown RBP7.34□□□□□ -1.23
VPS39-207ENST00000563692 P2RY1P47900 373 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 ARHGDIBP52566 201 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 AKR1C2P52895 323 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 UBA52P62987 128 aaKnown RBP7.34□□□□□ -1.23
VPS39-207ENST00000563692 VAMP2P63027 116 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 KRTAP1-1Q07627 177 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 EIF4EBP1Q13541 118 aaPredicted RBP7.34□□□□□ -1.23
VPS39-207ENST00000563692 NMSQ5H8A3 153 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 CT45A1Q5HYN5 189 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 HEPN1Q6WQI6 88 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 FGFRL1Q8N441 504 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 FAM71E2Q8N5Q1 922 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 OR4D5Q8NGN0 318 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 CT45A3Q8NHU0 189 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 GPR146Q96CH1 333 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 NEIL1Q96FI4 390 aaPredicted RBP7.34□□□□□ -1.23
VPS39-207ENST00000563692 AQP10Q96PS8 301 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 HEXA-AS1Q9H8Q6 139 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 C19orf12Q9NSK7 152 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 OR5AC2Q9NZP5 309 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 CDC42EP3Q9UKI2 254 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 MMP24Q9Y5R2 645 aa7.34□□□□□ -1.23
VPS39-207ENST00000563692 SONP18583 2426 aaKnown RBP7.34□□□□□ -1.23
VPS39-207ENST00000563692 CHD3Q12873 2000 aaKnown RBP7.34□□□□□ -1.24
VPS39-207ENST00000563692 M0R1X1 148 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 GPR137BO60478 399 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 HPRT1P00492 218 aa7.33□□□□□ -1.24
VPS39-207ENST00000563692 DUTP33316 252 aaKnown RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms