RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 DUSP16Q9BY84 665 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 NMES1Q9C002 83 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 TMEM133Q9H2Q1 129 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 TCEAL2Q9H3H9 227 aaPredicted RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 ACP6Q9NPH0 428 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 B3GAT2Q9NPZ5 323 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 TAS2R16Q9NYV7 291 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 MTFP1Q9UDX5 166 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 OR5V1Q9UGF6 321 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 SLC23A2Q9UGH3 650 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 BOKQ9UMX3 212 aaPredicted RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 PSG8Q9UQ74 426 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 HS3ST2Q9Y278 367 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 TP53BP1Q12888 1972 aaPredicted RBP2.77□□□□□ -1.97
VPS35-203ENST00000562420 KCPQ6ZWJ8 1503 aa2.77□□□□□ -1.97
VPS35-203ENST00000562420 NRAPQ86VF7 1730 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 GLI3P10071 1580 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 TRBV9A0A0B4J1U6 114 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 A0A0G2JN53 185 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 IGLC7A0M8Q6 106 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 CD300LBA8K4G0 201 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 M0R2Z0 102 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 PIRO00625 290 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 XKRYO14609 159 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 EEF1E1O43324 174 aaKnown RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 YPEL1O60688 119 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 ALOX12BO75342 701 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 ARL6IP5O75915 188 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 BRI3O95415 125 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 HBE1P02100 147 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 TRGC2P03986 189 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 TACSTD2P09758 323 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 IGLC2P0DOY2 106 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 IGLC3P0DOY3 106 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 CD1DP15813 335 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 ELK1P19419 428 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 ADORA2BP29275 332 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 DRD3P35462 400 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 ZNF93P35789 620 aaPredicted RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 OR1D4P47884 311 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 PRLHRP49683 370 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 POLR2JP52435 117 aaKnown RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 DLX6P56179 175 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 CLDN6P56747 220 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 TAS2R46P59540 309 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 S100A10P60903 97 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 LMO4P61968 165 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 RHOBP62745 196 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 MEF2BQ02080 365 aaPredicted RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 MFGE8Q08431 387 aaPredicted RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 PLCXD2Q0VAA5 305 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 ENDOGQ14249 297 aaKnown RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 MEF2DQ14814 521 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 EXOSC7Q15024 291 aaKnown RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 PDGFRLQ15198 375 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 OR7A5Q15622 319 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 CCSMST1Q4G0I0 132 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 PRR30Q53SZ7 412 aaPredicted RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 TIMM23BQ5SRD1 257 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 FAM162BQ5T6X4 162 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 Q6Q795 121 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 SBSNQ6UWP8 590 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 Q6ZSR6 202 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 CEACAM19Q7Z692 300 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 CALHM3Q86XJ0 350 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 OR4N5Q8IXE1 308 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 SLC35F2Q8IXU6 374 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 UBALD2Q8IYN6 164 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 MUC15Q8N387 334 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 TTC9CQ8N5M4 171 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 C5orf17Q8NAS9 161 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 RELL2Q8NC24 303 aaPredicted RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 OR51A4Q8NGJ6 313 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 OR2T27Q8NH04 317 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 SLC25A40Q8TBP6 338 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 RNF138Q8WVD3 245 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 TWIST2Q8WVJ9 160 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 PP6455Q8WZ26 134 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 APH1AQ96BI3 265 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 S100A16Q96FQ6 103 aaKnown RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 ADTRPQ96IZ2 230 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 IP6K3Q96PC2 410 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 AP1S3Q96PC3 154 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 SCGB3A2Q96PL1 93 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 AQP10Q96PS8 301 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 YPEL2Q96QA6 119 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 TBX15Q96SF7 602 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 GINS3Q9BRX5 216 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 RSPO3Q9BXY4 272 aaPredicted RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 POLR2J3Q9H1A7 115 aaKnown RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 NXF5Q9H1B4 397 aaKnown RBP2.76□□□□□ -1.97
VPS35-203ENST00000562420 IFI27L2Q9H2X8 130 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 RHOJQ9H4E5 214 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 RPRMQ9NS64 109 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 SIGLEC8Q9NYZ4 499 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 KLK13Q9UKR3 277 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 FUT9Q9Y231 359 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 ASF1AQ9Y294 204 aa2.76□□□□□ -1.97
VPS35-203ENST00000562420 CSDC2Q9Y534 153 aaKnown RBP2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms