RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 SFT2D2O95562 160 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 DUS4LO95620 317 aaKnown RBP11.75□□□□□ -0.53
SHMT2-210ENST00000553950 SERPINE2P07093 398 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 SPNP16150 400 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 BRS3P32247 399 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 KRTAP1-1Q07627 177 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 DHRS2Q13268 280 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 TATDN3Q17R31 274 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 GLDNQ6ZMI3 551 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-210ENST00000553950 PDZD9Q8IXQ8 264 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 ADAD2Q8NCV1 583 aaKnown RBP11.75□□□□□ -0.53
SHMT2-210ENST00000553950 TMEM230Q96A57 120 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 PHB2Q99623 299 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 MRPL20Q9BYC9 149 aaKnown RBP11.75□□□□□ -0.53
SHMT2-210ENST00000553950 MS4A7Q9GZW8 240 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-210ENST00000553950 YAE1D1Q9NRH1 226 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 COMMD9Q9P000 198 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 ZNRD1Q9P1U0 126 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 WASHC3Q9Y3C0 194 aa11.75□□□□□ -0.53
SHMT2-210ENST00000553950 IGHV1-3A0A0C4DH29 117 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 DUXBA0A1W2PPF3 345 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 C7orf66A4D0T2 115 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 IGHV4-38-2P0DP08 117 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 UCP1P25874 307 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 RAB25P57735 213 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 PRB3Q04118 309 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-210ENST00000553950 PPP1R1AQ13522 171 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 AANATQ16613 207 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 OR5AN1Q8NGI8 311 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 ZNF431Q8TF32 576 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-210ENST00000553950 IL22RA2Q969J5 263 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 C5orf30Q96GV9 206 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 NABP2Q9BQ15 211 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 SLC35D1Q9NTN3 355 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 AKAP9Q99996 3911 aa11.74□□□□□ -0.53
SHMT2-210ENST00000553950 A0A0B4J2A0 478 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 A0A1W2PPI3 338 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 A0A1W2PRD5 423 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 A0A1W2PRF3 423 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 A0A1W2PRM7 423 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 C9orf170A2RU37 121 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 H0YJW9 148 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 OR5AC1P0C628 307 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 SRP14P37108 136 aaKnown RBP11.73□□□□□ -0.53
SHMT2-210ENST00000553950 REG1BP48304 166 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 DYNLT3P51808 116 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 HABP2Q14520 560 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-210ENST00000553950 SSX2Q16385 188 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 KLF17Q5JT82 389 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-210ENST00000553950 LHFPL4Q7Z7J7 247 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 SPAG16Q8N0X2 631 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 LGI3Q8N145 548 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 PIP4P2Q8N4L2 257 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 CAPSLQ8WWF8 208 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 DDB2Q92466 427 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 TMEM222Q9H0R3 208 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 SHPKQ9UHJ6 478 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 CDC42EP3Q9UKI2 254 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 HILPDAQ9Y5L2 63 aa11.73□□□□□ -0.53
SHMT2-210ENST00000553950 H7C2Y5 167 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 HPRT1P00492 218 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 AVPP01185 164 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 CT45A6P0DMU7 189 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 CT45A5P0DMU8 189 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 CT45A7P0DMV0 189 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 VSIG10L2P0DP72 767 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 CD1BP29016 333 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 ERVK-16P61578 105 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 SUPT4H1P63272 117 aaKnown RBP11.72□□□□□ -0.53
SHMT2-210ENST00000553950 FAM120AOSQ5T036 256 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 RUSC1-AS1Q66K80 236 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 CLEC9AQ6UXN8 241 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 BRD3OSQ6XYD6 125 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 LIAT1Q6ZQX7 453 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 C1orf229Q6ZS94 237 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-210ENST00000553950 MOB3BQ86TA1 216 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 ZNF383Q8NA42 475 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 OR4C13Q8NGP0 309 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 OSR1Q8TAX0 266 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-210ENST00000553950 CASTOR1Q8WTX7 329 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 MITD1Q8WV92 249 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 TP53RKQ96S44 253 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 PLEKHA2Q9HB19 425 aa11.72□□□□□ -0.53
SHMT2-210ENST00000553950 NAV3Q8IVL0 2385 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 CSPG4Q6UVK1 2322 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 LINC00473A8K010 186 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 VGLL3A8MV65 326 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 TIMM23O14925 209 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 FCGR3BO75015 233 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 PROP1O75360 226 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 HRASP01112 189 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 SLC9A3R2Q15599 337 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 ZNF695Q8IW36 515 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 LRTM2Q8N967 370 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 DRAXINQ8NBI3 349 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-210ENST00000553950 RBPMSQ93062 196 aaKnown RBP11.71□□□□□ -0.53
SHMT2-210ENST00000553950 RNF5Q99942 180 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 BEX2Q9BXY8 128 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 MEGF9Q9H1U4 602 aa11.71□□□□□ -0.53
SHMT2-210ENST00000553950 BEX1Q9HBH7 125 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms