RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 OR51J1Q9H342 316 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 NARFLQ9H6Q4 476 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 METTL8Q9H825 291 aaKnown RBP4.1□□□□□ -1.75
VTI1B-202ENST00000553619 LPAR2Q9HBW0 351 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 CCL28Q9NRJ3 127 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 FAM212BQ9NTI7 297 aaPredicted RBP4.1□□□□□ -1.75
VTI1B-202ENST00000553619 OR1A1Q9P1Q5 309 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 MBD2Q9UBB5 411 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 ONECUT1Q9UBC0 465 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 DUX4Q9UBX2 424 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 SHPKQ9UHJ6 478 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 FLVCR2Q9UPI3 526 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 VSIG4Q9Y279 399 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 PRELID3BQ9Y3B1 194 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 AMMECR1Q9Y4X0 333 aaPredicted RBP4.1□□□□□ -1.75
VTI1B-202ENST00000553619 TNFRSF18Q9Y5U5 241 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 ATMQ13315 3056 aa4.1□□□□□ -1.75
VTI1B-202ENST00000553619 SPTAN1Q13813 2472 aaKnown RBP4.1□□□□□ -1.75
VTI1B-202ENST00000553619 A0A087X0M5 115 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 IGHV2-70DA0A0C4DH43 119 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 C3orf85A0A1B0GTC6 90 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 A0A1B0GX30 115 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 DUXBA0A1W2PPF3 345 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 C9orf170A2RU37 121 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 C7orf66A4D0T2 115 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 CRYM-AS1A6NIL9 109 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 J3QR06 171 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 PHF1O43189 567 aaPredicted RBP4.09□□□□□ -1.75
VTI1B-202ENST00000553619 TSC22D2O75157 780 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 PGLYRP1O75594 196 aaPredicted RBP4.09□□□□□ -1.75
VTI1B-202ENST00000553619 SFT2D2O95562 160 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 HLA-AP01891 365 aaKnown RBP4.09□□□□□ -1.75
VTI1B-202ENST00000553619 GAPDHP04406 335 aaKnown RBP4.09□□□□□ -1.75
VTI1B-202ENST00000553619 TRAPPC2P0DI81 140 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 TRAPPC2BP0DI82 140 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 RRASP10301 218 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 CCL3L1P16619 93 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 ANXA7P20073 488 aaKnown RBP4.09□□□□□ -1.75
VTI1B-202ENST00000553619 OMGP23515 440 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 MC5RP33032 325 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 PPP1CCP36873 323 aaKnown RBP4.09□□□□□ -1.75
VTI1B-202ENST00000553619 CEACAM3P40198 252 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 ARHGDIBP52566 201 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 DVL1P1P54792 670 aaPredicted RBP4.09□□□□□ -1.75
VTI1B-202ENST00000553619 DLX6P56179 175 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 KRTAP10-9P60411 292 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 B2MP61769 119 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 ARF6P62330 175 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 LCN2P80188 198 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 NHLH2Q02577 135 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 C19orf54Q5BKX5 351 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 NCR3LG1Q68D85 454 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 ZNF626Q68DY1 528 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 FAM71F2Q6NXP2 309 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 ZNF818PQ6ZRF7 136 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 SLC25A48Q6ZT89 311 aaKnown RBP4.09□□□□□ -1.75
VTI1B-202ENST00000553619 GLCCI1Q86VQ1 547 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 ZNF695Q8IW36 515 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 LGI3Q8N145 548 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 TEX29Q8N6K0 151 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 UXS1Q8NBZ7 420 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 OR10X1Q8NGY0 326 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 UBALD1Q8TB05 177 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 CHAC2Q8WUX2 184 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 ASB13Q8WXK3 278 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 NRGNQ92686 78 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 FOXC2Q99958 501 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 CLEC7AQ9BXN2 247 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 BEX2Q9BXY8 128 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 REG4Q9BYZ8 158 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 OR2D2Q9H210 308 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 C5orf66Q9H5L9 145 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 NAA60Q9H7X0 242 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 UNKLQ9H9P5 680 aaKnown RBP4.09□□□□□ -1.75
VTI1B-202ENST00000553619 BEX1Q9HBH7 125 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 SLC2A9Q9NRM0 540 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 LIN7CQ9NUP9 197 aaKnown RBP4.09□□□□□ -1.75
VTI1B-202ENST00000553619 PPP1R14DQ9NXH3 145 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 CACFD1Q9UGQ2 172 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 RNF150Q9ULK6 438 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 KCNS2Q9ULS6 477 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 PSG11Q9UQ72 335 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 ALG5Q9Y673 324 aa4.09□□□□□ -1.75
VTI1B-202ENST00000553619 IGHV4-30-2A0A087WSY4 118 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 LEUTXA8MZ59 168 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 OOSP1A8MZH6 123 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 J3QLI3 93 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 TXNL1O43396 289 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 SERPINE2P07093 398 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 MSMBP08118 114 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 HKR1P10072 659 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 HLA-GP17693 338 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 F2RP25116 425 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 ZFP36P26651 326 aaKnown RBP4.08□□□□□ -1.76
VTI1B-202ENST00000553619 HTR1DP28221 377 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 THBS3P49746 956 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 BPIFB3P59826 476 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 RRAS2P62070 204 aaPredicted RBP4.08□□□□□ -1.76
VTI1B-202ENST00000553619 S100A12P80511 92 aa4.08□□□□□ -1.76
VTI1B-202ENST00000553619 PAX8Q06710 450 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms