RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 ZNF665Q9H7R5 613 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 HSPB7Q9UBY9 170 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 DMXL2Q8TDJ6 3036 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 LAMA5O15230 3695 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 TRAV38-1A0A0B4J264 116 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 KBTBD11-OT1A0A1B0GTJ5 212 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 LRRC30A6NM36 301 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 ZNF729A6NN14 1252 aaPredicted RBP4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 SHISA9B4DS77 424 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 ABCD4O14678 606 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 SIGLEC5O15389 551 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 SSSCA1O60232 199 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 SCAF4O95104 1147 aaKnown RBP4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 HPRT1P00492 218 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 OR4A8P0C604 315 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 ZNF16P17020 682 aaPredicted RBP4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 APOBEC3AP31941 199 aaPredicted RBP4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 DUTP33316 252 aaKnown RBP4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 SSTR5P35346 364 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 PPP1CCP36873 323 aaKnown RBP4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 SNCAP37840 140 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 KIR2DS2P43631 304 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 ASCL1P50553 236 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 RAB7AP51149 207 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 CASP6P55212 293 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 HOXA4Q00056 320 aaPredicted RBP4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 MEF2CQ06413 473 aaPredicted RBP4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 EFNB3Q15768 340 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 PDLIM3Q53GG5 364 aaPredicted RBP4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 VHLLQ6RSH7 139 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 DPPA3Q6W0C5 159 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 CENPVQ7Z7K6 275 aaPredicted RBP4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 C1orf87Q8N0U7 546 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 TPRX1Q8N7U7 411 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 ZNRF1Q8ND25 227 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 OR5C1Q8NGR4 320 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 OR52E5Q8NH55 327 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 GAFA1Q96PS6 74 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 SEC11CQ9BY50 192 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 SMIM3Q9BZL3 60 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 EGLN1Q9GZT9 426 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 MAGT1Q9H0U3 335 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 ESRP2Q9H6T0 727 aaKnown RBP4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 UQCC1Q9NVA1 299 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 GFOD1Q9NXC2 390 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 KAAG1Q9UBP8 84 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 CLN8Q9UBY8 286 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 CACNG5Q9UF02 275 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 RNF150Q9ULK6 438 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 KCNS2Q9ULS6 477 aa4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 CARHSP1Q9Y2V2 147 aaKnown RBP4.97□□□□□ -1.61
VIPAS39-204ENST00000553576 ATMQ13315 3056 aa4.96□□□□□ -1.61
VIPAS39-204ENST00000553576 IGHV3OR15-7A0A075B7D8 119 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 TRAV1-1A0A0B4J248 108 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 BTBD17A6NE02 478 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 LINC00473A8K010 186 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 C17orf98A8MV24 154 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 RNASEK-C17orf49H0YIS7 233 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 TMEM178BH3BS89 294 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 PPIHO43447 177 aaKnown RBP4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 NDUFA2O43678 99 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 ZG16O60844 167 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 RAMP3O60896 148 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 TFF1P04155 84 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 SFTPCP11686 197 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 IRF2P14316 349 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 ATP6V0CP27449 155 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 DYNLT3P51808 116 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 ZNF134P52741 427 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 AKR1C2P52895 323 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 DVL1P1P54792 670 aaPredicted RBP4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 UBE2KP61086 200 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 SERF2P84101 59 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 TNFRSF9Q07011 255 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 EDDM3AQ14507 147 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 ATP6V1FQ16864 119 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 PRR30Q53SZ7 412 aaPredicted RBP4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 NCR3LG1Q68D85 454 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 CLEC9AQ6UXN8 241 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 TMEM14EPQ6UXP3 125 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 Q6ZRG5 221 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 STX12Q86Y82 276 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 PUSL1Q8N0Z8 303 aaKnown RBP4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 ZNF439Q8NDP4 499 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 LFNGQ8NES3 379 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 RFESDQ8TAC1 157 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 UBALD1Q8TB05 177 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 ZNF596Q8TC21 504 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 DDB2Q92466 427 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 RNASE6Q93091 150 aaKnown RBP4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 ADTRPQ96IZ2 230 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 CIB3Q96Q77 187 aaPredicted RBP4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 ATP5SQ99766 215 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 PSMG3Q9BT73 122 aaPredicted RBP4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 DCTN5Q9BTE1 182 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 HRH4Q9H3N8 390 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 MS4A5Q9H3V2 200 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 CALYQ9NYX4 217 aa4.96□□□□□ -1.62
VIPAS39-204ENST00000553576 IDI2-AS1Q9NZ38 188 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms