RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CCL8P80075 99 aa14.1□□□□□ -0.15
USP28-208ENST00000540438 MBNL3Q9NUK0 354 aaKnown RBP14.1□□□□□ -0.15
USP28-208ENST00000540438 SRP19P09132 144 aaKnown RBP14.1□□□□□ -0.15
USP28-208ENST00000540438 BAXQ07812 192 aa14.1□□□□□ -0.15
USP28-208ENST00000540438 HMGN3Q15651 99 aa14.1□□□□□ -0.15
USP28-208ENST00000540438 ZADH2Q8N4Q0 377 aa14.1□□□□□ -0.15
USP28-208ENST00000540438 QTRT1Q9BXR0 403 aaKnown RBP14.1□□□□□ -0.15
USP28-208ENST00000540438 WNK2Q9Y3S1 2297 aa14.1□□□□□ -0.15
USP28-208ENST00000540438 M0R1X1 148 aa14.09□□□□□ -0.15
USP28-208ENST00000540438 RCC1LQ96I51 464 aaKnown RBP14.09□□□□□ -0.15
USP28-208ENST00000540438 FAM215AQ9Y5M1 114 aa14.09□□□□□ -0.15
USP28-208ENST00000540438 C1orf196B1AJZ1 125 aa14.09□□□□□ -0.15
USP28-208ENST00000540438 TNFRSF9Q07011 255 aa14.09□□□□□ -0.15
USP28-208ENST00000540438 FABP9Q0Z7S8 132 aa14.09□□□□□ -0.15
USP28-208ENST00000540438 RPUSD4Q96CM3 377 aaKnown RBP14.09□□□□□ -0.15
USP28-208ENST00000540438 CXCL1P09341 107 aa14.09□□□□□ -0.15
USP28-208ENST00000540438 H2BFWTQ7Z2G1 175 aa14.09□□□□□ -0.15
USP28-208ENST00000540438 LINC00596Q86U02 117 aa14.09□□□□□ -0.15
USP28-208ENST00000540438 Q8IYB0 196 aa14.09□□□□□ -0.15
USP28-208ENST00000540438 GCSAMQ8N6F7 178 aa14.09□□□□□ -0.15
USP28-208ENST00000540438 NAV3Q8IVL0 2385 aa14.09□□□□□ -0.15
USP28-208ENST00000540438 DLX1P56177 255 aa14.08□□□□□ -0.16
USP28-208ENST00000540438 UBE2G2P60604 165 aa14.08□□□□□ -0.16
USP28-208ENST00000540438 EIF2S3LQ2VIR3 472 aaKnown RBP14.08□□□□□ -0.16
USP28-208ENST00000540438 ZNF645Q8N7E2 425 aa14.08□□□□□ -0.16
USP28-208ENST00000540438 CLDND2Q8NHS1 167 aa14.08□□□□□ -0.16
USP28-208ENST00000540438 NANPQ8TBE9 248 aa14.08□□□□□ -0.16
USP28-208ENST00000540438 FAM122AQ96E09 287 aa14.08□□□□□ -0.16
USP28-208ENST00000540438 WIPI2Q9Y4P8 454 aa14.08□□□□□ -0.16
USP28-208ENST00000540438 YIF1AO95070 293 aa14.08□□□□□ -0.16
USP28-208ENST00000540438 OR9G9P0C7N8 305 aa14.08□□□□□ -0.16
USP28-208ENST00000540438 RAB5AP20339 215 aa14.08□□□□□ -0.16
USP28-208ENST00000540438 ACSM6Q6P461 480 aa14.08□□□□□ -0.16
USP28-208ENST00000540438 CISD2Q8N5K1 135 aaKnown RBP14.08□□□□□ -0.16
USP28-208ENST00000540438 RPP25LQ8N5L8 163 aaKnown RBP14.08□□□□□ -0.16
USP28-208ENST00000540438 RAB40CQ96S21 281 aa14.08□□□□□ -0.16
USP28-208ENST00000540438 TRBV6-6A0A0A6YYG2 114 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 OOEPA6NGQ2 149 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 ZNF98A6NK75 572 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 GNPNAT1Q96EK6 184 aaPredicted RBP14.07□□□□□ -0.16
USP28-208ENST00000540438 TANC2Q9HCD6 1990 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 ANKHD1Q8IWZ3 2542 aaKnown RBP14.07□□□□□ -0.16
USP28-208ENST00000540438 AQP7O14520 342 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 MDH2P40926 338 aaKnown RBP14.07□□□□□ -0.16
USP28-208ENST00000540438 RAB5CP51148 216 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 SMIM21Q3B7S5 101 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 ABHD12Q8N2K0 398 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 CCL13Q99616 98 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 BIN3Q9NQY0 253 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 CRYAAP02489 173 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 COX5AP20674 150 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 GPR12P47775 334 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 RAB5BP61020 215 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 TLE4Q04727 773 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 PRR30Q53SZ7 412 aaPredicted RBP14.07□□□□□ -0.16
USP28-208ENST00000540438 WFDC8Q8IUA0 241 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 FAM216BQ8N7L0 139 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 DTD1Q8TEA8 209 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 LHX4Q969G2 390 aa14.07□□□□□ -0.16
USP28-208ENST00000540438 PATZ1Q9HBE1 687 aaKnown RBP14.07□□□□□ -0.16
USP28-208ENST00000540438 MARCH11A6NNE9 402 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 MMP23AO75900 390 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 CLDN14O95500 239 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 GYPAP02724 150 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 FGF7P21781 194 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 TUBG1P23258 451 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 RTP5Q14D33 572 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 GUSBP1Q15486 140 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 WDR25Q64LD2 544 aaPredicted RBP14.06□□□□□ -0.16
USP28-208ENST00000540438 PLSCR4Q9NRQ2 329 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 SLC25A15Q9Y619 301 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 TRAV38-1A0A0B4J264 116 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 SNRPCP09234 159 aaKnown RBP14.06□□□□□ -0.16
USP28-208ENST00000540438 HNF1AP20823 631 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 SRSF7Q16629 238 aaKnown RBP eCLIP14.06□□□□□ -0.16
USP28-208ENST00000540438 RND1Q92730 232 aa14.06□□□□□ -0.16
USP28-208ENST00000540438 MAP1LC3B2A6NCE7 125 aa14.05□□□□□ -0.16
USP28-208ENST00000540438 LRRC30A6NM36 301 aa14.05□□□□□ -0.16
USP28-208ENST00000540438 Q8WTZ3 238 aa14.05□□□□□ -0.16
USP28-208ENST00000540438 MRPL37Q9BZE1 423 aaKnown RBP14.05□□□□□ -0.16
USP28-208ENST00000540438 MAP1LC3BQ9GZQ8 125 aa14.05□□□□□ -0.16
USP28-208ENST00000540438 SLC39A9Q9NUM3 307 aa14.05□□□□□ -0.16
USP28-208ENST00000540438 CELSR1Q9NYQ6 3014 aa14.05□□□□□ -0.16
USP28-208ENST00000540438 TET2Q6N021 2002 aaPredicted RBP14.05□□□□□ -0.16
USP28-208ENST00000540438 CGAP01215 116 aa14.05□□□□□ -0.16
USP28-208ENST00000540438 EIF2S3P41091 472 aaKnown RBP14.05□□□□□ -0.16
USP28-208ENST00000540438 Q8TCH9 128 aa14.05□□□□□ -0.16
USP28-208ENST00000540438 TAF15Q92804 592 aaKnown RBP eCLIP14.05□□□□□ -0.16
USP28-208ENST00000540438 HES4Q9HCC6 221 aa14.05□□□□□ -0.16
USP28-208ENST00000540438 KIAA1456Q9P272 454 aa14.05□□□□□ -0.16
USP28-208ENST00000540438 ARHGAP32A7KAX9 2087 aa14.05□□□□□ -0.16
USP28-208ENST00000540438 CYB5BO43169 146 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 DFFBO76075 338 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 IFNA10P01566 189 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 ACAA1P09110 424 aaPredicted RBP14.04□□□□□ -0.16
USP28-208ENST00000540438 MOB1BQ7L9L4 216 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 WDR61Q9GZS3 305 aaKnown RBP14.04□□□□□ -0.16
USP28-208ENST00000540438 PRSS44E7EML9 344 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 SPINT2O43291 252 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 LMO1P25800 156 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms