RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 GRPEL2Q8TAA5 225 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM57AQ8TBR7 257 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 MRPL30Q8TCC3 161 aaKnown RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF675Q8TD23 568 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CD200R1Q8TD46 325 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ABHD3Q8WU67 409 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CT55Q8WUE5 264 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TWIST2Q8WVJ9 160 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CANT1Q8WVQ1 401 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 MBD3L1Q8WWY6 194 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 DNAJC9Q8WXX5 260 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC7A6Q92536 515 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 DCUN1D4Q92564 292 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 GHSRQ92847 366 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM203Q969S6 136 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TM4SF18Q96CE8 201 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PLEKHB2Q96CS7 222 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 FXYD5Q96DB9 178 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 STARD4Q96DR4 205 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 GNPNAT1Q96EK6 184 aaPredicted RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 L3HYPDHQ96EM0 354 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC25A44Q96H78 314 aaPredicted RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM101Q96IK0 257 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 VSIG2Q96IQ7 327 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 KCNS1Q96KK3 526 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 LINC00167Q96N53 147 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 C18orf15Q96N68 181 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF285Q96NJ3 590 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 GPR82Q96P67 336 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PPP1R2P1Q96PQ5 205 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 RNF157Q96PX1 679 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TSPAN32Q96QS1 320 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR2A5Q96R48 311 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRIB3Q96RU7 358 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 LYSMD1Q96S90 227 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CAMK2N2Q96S95 79 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 NMNAT3Q96T66 252 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 LINC01587Q99440 93 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SERPINI1Q99574 410 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCL13Q99616 98 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 HSPB9Q9BQS6 159 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SEC22CQ9BRL7 303 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TCEAL7Q9BRU2 100 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF649Q9BS31 505 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 C2orf88Q9BSF0 95 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 THTPAQ9BU02 230 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PAXXQ9BUH6 204 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 EFCAB11Q9BUY7 163 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCDC32Q9BV29 185 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM147Q9BVK8 224 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 RSPO3Q9BXY4 272 aaPredicted RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 GNB1LQ9BYB4 327 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ULBP3Q9BZM4 244 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 MAP1LC3BQ9GZQ8 125 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCDC90BQ9GZT6 254 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 GFRA4Q9GZZ7 299 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM126AQ9H061 195 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 GTSF1LQ9H1H1 148 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 MED28Q9H204 178 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 IFI27L2Q9H2X8 130 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR52D1Q9H346 318 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CDC42EP4Q9H3Q1 356 aaKnown RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 RNF122Q9H9V4 155 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 WFDC1Q9HC57 220 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 HMG20AQ9NP66 347 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CYTL1Q9NRR1 136 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 KCNIP2Q9NS61 270 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRR34Q9NV39 138 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 RBM12B-AS1Q9P1G2 102 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TAAR3PQ9P1P4 343 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 COPZ2Q9P299 210 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 DHCR7Q9UBM7 475 aaKnown RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 CACNG5Q9UF02 275 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR12D3Q9UGF7 316 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC23A2Q9UGH3 650 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SS18L2Q9UHA2 77 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 TAC3Q9UHF0 121 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 AK3Q9UIJ7 227 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF225Q9UK10 706 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 JPT1Q9UK76 154 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 DNAJC12Q9UKB3 198 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRNDQ9UKY0 176 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 SSR3Q9UNL2 185 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 BTRCQ9Y297 605 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 KLF13Q9Y2Y9 288 aaPredicted RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ASB4Q9Y574 426 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PCYT1BQ9Y5K3 369 aaPredicted RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 RFNGQ9Y644 331 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 PIK3C2AO00443 1686 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ARHGEF11O15085 1522 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 ROBO3Q96MS0 1386 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 GREB1LQ9C091 1923 aaPredicted RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 MYH15Q9Y2K3 1946 aa0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 AHDC1Q5TGY3 1603 aaPredicted RBP0.42□□□□□ -2.34
RNU4-54P-201ENST00000516428 UHRF1BP1LA0JNW5 1464 aa0.41□□□□□ -2.34
RNU4-54P-201ENST00000516428 DOCK7Q96N67 2140 aa0.41□□□□□ -2.34
RNU4-54P-201ENST00000516428 NALCNQ8IZF0 1738 aa0.41□□□□□ -2.34
RNU4-54P-201ENST00000516428 PTPRJQ12913 1337 aa0.41□□□□□ -2.34
RNU4-54P-201ENST00000516428 CHD2O14647 1828 aaKnown RBP0.41□□□□□ -2.34
RNU4-54P-201ENST00000516428 KIF1BO60333 1816 aa0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms