RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 EGR1P18146 543 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 KLF14Q8TD94 323 aaPredicted RBP10.85□□□□□ -0.67
USP53-209ENST00000514665 RTBDNQ9BSG5 229 aaPredicted RBP10.85□□□□□ -0.67
USP53-209ENST00000514665 TCF20Q9UGU0 1960 aaKnown RBP10.85□□□□□ -0.67
USP53-209ENST00000514665 TGIF2-C20orf24A0A0A6YYL0 155 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 ODAMA1E959 279 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 RAB29O14966 203 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 OR10J1P30954 320 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 PTTG1IPP53801 180 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 LY6G6FQ5SQ64 297 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 OR2D3Q8NGH3 330 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 SIGLEC12Q96PQ1 595 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 ZNF646O15015 1829 aaPredicted RBP10.85□□□□□ -0.67
USP53-209ENST00000514665 IGKV1-9A0A0C4DH69 117 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 S1PR2O95136 353 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 CYB5R3P00387 301 aaPredicted RBP10.85□□□□□ -0.67
USP53-209ENST00000514665 COL8A1P27658 744 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 NHLH1Q02575 133 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 TCTEX1D1Q8N7M0 179 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 RAB1CQ92928 201 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 TMEM54Q969K7 222 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 HIST1H2BAQ96A08 127 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 MRPL13Q9BYD1 178 aaKnown RBP10.85□□□□□ -0.67
USP53-209ENST00000514665 WASHC3Q9Y3C0 194 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 OR51B2Q9Y5P1 312 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 DOCK9Q9BZ29 2069 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 WDR81Q562E7 1941 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 OR5AL1P0C617 328 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 ZNF343Q6P1L6 599 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 NFAM1Q8NET5 270 aaPredicted RBP10.85□□□□□ -0.67
USP53-209ENST00000514665 PKIBQ9C010 78 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 CLEC5AQ9NY25 188 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 KCNMB2Q9Y691 235 aa10.85□□□□□ -0.67
USP53-209ENST00000514665 hCG_38984A0A1B0GV85 526 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 LOC390937A0A1W2PQ73 354 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 IGSF23A1L1A6 192 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 PROB1E7EW31 1015 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 BMPR1BO00238 502 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 WNT9BO14905 357 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 GNG7O60262 68 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 RHBDL1O75783 438 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 VKORC1L1Q8N0U8 176 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 DRAM1Q8N682 238 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 OR5AU1Q8NGC0 362 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 CCKARP32238 428 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 MFAP2P55001 183 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 TNFRSF9Q07011 255 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 VN1R17PQ8TDU5 208 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 IL36RNQ9UBH0 155 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 SLC25A10Q9UBX3 287 aaPredicted RBP10.84□□□□□ -0.67
USP53-209ENST00000514665 MARCH11A6NNE9 402 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 IGLV3-19P01714 112 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 ACAA1P09110 424 aaPredicted RBP10.84□□□□□ -0.67
USP53-209ENST00000514665 SSTR5P35346 364 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 P2RY6Q15077 328 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 Q6ZN92 141 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 OR8G5Q8NG78 346 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 SLC25A28Q96A46 364 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 MS4A5Q9H3V2 200 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 THYN1Q9P016 225 aa10.84□□□□□ -0.67
USP53-209ENST00000514665 M0R2Z0 102 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 UCP3P55916 312 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 C10orf113Q5VZT2 155 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 LINC00518Q8N0U6 118 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 ABHD12Q8N2K0 398 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 PAQR4Q8N4S7 273 aaPredicted RBP10.83□□□□□ -0.68
USP53-209ENST00000514665 FAM222BQ8WU58 562 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 HEATR5AQ86XA9 2040 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 TMSB15BA0A087X1C1 80 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 H0YIZ8 118 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 M0R143 59 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 CEACAM3P40198 252 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 ZNF137PP52743 207 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 CFHR1Q03591 330 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 MARS2Q96GW9 593 aaKnown RBP10.83□□□□□ -0.68
USP53-209ENST00000514665 TIMP4Q99727 224 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 SYNGR3O43761 229 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 OR8I2Q8N0Y5 310 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 OR10S1Q8NGN2 331 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 ASCL3Q9NQ33 180 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 FOXJ2Q9P0K8 574 aa10.83□□□□□ -0.68
USP53-209ENST00000514665 PPIAL4EA0A075B759 164 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 PRR33A8MZF0 331 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 PPIAL4DF5H284 164 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 K7N7A8 449 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 P01737 135 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 IGHV3-48P01763 117 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 OR4A8P0C604 315 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 PPIAL4FP0DN26 164 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 MMDQ15546 238 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 HCP5Q6MZN7 132 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 ZNF645Q8N7E2 425 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 IMMP1LQ96LU5 166 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 TMUB1Q9BVT8 246 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 IL19Q9UHD0 177 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 PPIAL4AQ9Y536 164 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 FTH1P19P0C7X4 201 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 RTP5Q14D33 572 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 STARD4Q96DR4 205 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 RNF126Q9BV68 326 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms