RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 ALKBH6Q3KRA9 238 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 ORAOV1Q8WV07 137 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 FOXC2Q99958 501 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 C1orf43Q9BWL3 253 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 FRRS1LQ9P0K9 344 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 KCNMB2Q9Y691 235 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 SNRNP200O75643 2136 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 AKAP6Q13023 2319 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 RUNX1Q01196 453 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 COL10A1Q03692 680 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 C9orf153Q5TBE3 101 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 PMS2CLQ68D20 193 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 MMD2Q8IY49 270 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 OR4D5Q8NGN0 318 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 TMEM106BQ9NUM4 274 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 CISD1Q9NZ45 108 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 FOXD3Q9UJU5 478 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 ALPK2Q86TB3 2170 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 OGG1O15527 345 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 ACP1P24666 158 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 HOXA4Q00056 320 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 RNPS1Q15287 305 aaKnown RBP7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 LYZL2Q7Z4W2 148 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 OR11H4Q8NGC9 324 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 MRGPRDQ8TDS7 321 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 APOBEC3DQ96AK3 386 aaPredicted RBP7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 IL36GQ9NZH8 169 aa7.6□□□□□ -1.19
LIMCH1-218ENST00000513024 TRAV8-1A0A0A6YYK1 113 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 A0A1B0GU03 582 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 PPIHO43447 177 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 TGFAP01135 160 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 ASAH2BP0C7U1 165 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 GNG3P63215 75 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 PAX2Q02962 417 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 OCIAD2Q56VL3 154 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 ATRAIDQ6UW56 229 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 PNKDQ8N490 385 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 ADAD2Q8NCV1 583 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 OR1K1Q8NGR3 316 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 MRAP2Q96G30 205 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 ZFP64Q9NPA5 681 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 DOPEY2Q9Y3R5 2298 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 CTSVO60911 334 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 PATE4P0C8F1 98 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 CBLN1P23435 193 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 KIR2DS2P43631 304 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 IRF3Q14653 427 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 ZNF774Q6NX45 483 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 GALNT14Q96FL9 552 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 GRAMD2BQ96HH9 432 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 ZNF479Q96JC4 524 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 MOB4Q9Y3A3 225 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 POLR2AP24928 1970 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 IGHV3-43A0A0B4J1X8 118 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 NKX2-6A6NCS4 301 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 IGHV3-43DP0DP04 118 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 PPP1CAP62136 330 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 LRRC75BQ2VPJ9 315 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 TEPPQ6URK8 271 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 LINC01555Q8NAE3 123 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 MYOZ1Q9NP98 299 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 NPTNQ9Y639 398 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 GVINP1Q7Z2Y8 2422 aa7.59□□□□□ -1.19
LIMCH1-218ENST00000513024 ISG15P05161 165 aa7.59□□□□□ -1.2
LIMCH1-218ENST00000513024 PPP1CCP36873 323 aaKnown RBP7.59□□□□□ -1.2
LIMCH1-218ENST00000513024 LRRC10Q5BKY1 277 aa7.59□□□□□ -1.2
LIMCH1-218ENST00000513024 MEIG1Q5JSS6 88 aa7.59□□□□□ -1.2
LIMCH1-218ENST00000513024 Q8IYB0 196 aa7.59□□□□□ -1.2
LIMCH1-218ENST00000513024 LYG1Q8N1E2 194 aa7.59□□□□□ -1.2
LIMCH1-218ENST00000513024 ZNF441Q8N8Z8 693 aa7.59□□□□□ -1.2
LIMCH1-218ENST00000513024 NT5CQ8TCD5 201 aa7.59□□□□□ -1.2
LIMCH1-218ENST00000513024 SDHCQ99643 169 aaPredicted RBP7.59□□□□□ -1.2
LIMCH1-218ENST00000513024 GPR27Q9NS67 375 aa7.59□□□□□ -1.2
LIMCH1-218ENST00000513024 TAAR3PQ9P1P4 343 aa7.59□□□□□ -1.2
LIMCH1-218ENST00000513024 PSME4Q14997 1843 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 TRAV9-2A0A087WT02 112 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 TRGV10A0A0A0MS01 117 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 PGPEP1LA6NFU8 196 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 SPTBP11277 2137 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 MYF5P13349 255 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 MICBQ29980 383 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 C1QL3Q5VWW1 255 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 C10orf113Q5VZT2 155 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 WDYHV1Q96HA8 205 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 TMEM160Q9NX00 188 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 IGLV3-16A0A075B6K0 115 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 EFNB2P52799 333 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 SAMD5Q5TGI4 173 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 GUSBP11Q6P575 273 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 Q6ZNB5 142 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 C16orf47Q6ZP98 133 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 TMEM252Q8N6L7 170 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 AQP10Q96PS8 301 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 NPFFR1Q9GZQ6 430 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 ST20Q9HBF5 79 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 FER1L6Q2WGJ9 1857 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 TRBV5-3A0A0A0MS03 114 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 GAGE12BA1L429 117 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 TMEM189A5PLL7 270 aa7.58□□□□□ -1.2
LIMCH1-218ENST00000513024 NPIPB6E9PJ23 425 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms