RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TMEM45BQ96B21 275 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 PAM16Q9Y3D7 125 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 COL4A3Q01955 1670 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 DENND4CQ5VZ89 1909 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 TRAV34A0A0B4J273 112 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 CLDN14O95500 239 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 DEFA4P12838 97 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 ZNF25P17030 456 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 GNB1P62873 340 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 CDCP2Q5VXM1 449 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 STUMQ69YW2 141 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 CYP2G1PQ6ZSU1 146 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 GMPPAQ96IJ6 420 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 LINC00470Q9BZP3 86 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 ARL2-SNX15V9GYD0 113 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 DOCK9Q9BZ29 2069 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 EGR1P18146 543 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 S100A7AQ86SG5 101 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 TCTEX1D1Q8N7M0 179 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 WFIKKN1Q96NZ8 548 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 SNRNP200O75643 2136 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 PRDX2P32119 198 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 OPRK1P41145 380 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 SPCS3P61009 180 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 HIST3H3Q16695 136 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 FAM162BQ5T6X4 162 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 MIC13Q5XKP0 118 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 MRPL54Q6P161 138 aaKnown RBP7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 VN1R17PQ8TDU5 208 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 ADTRPQ96IZ2 230 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 NPVFQ9HCQ7 196 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 NAGKQ9UJ70 344 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 ANAPC10Q9UM13 185 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 LOC102723996A0A087X1L8 192 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 CXCL1P09341 107 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 KLF3P57682 345 aaPredicted RBP7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 UBE2L3P68036 154 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 PAX5Q02548 391 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 RTP5Q14D33 572 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 RNASEKQ6P5S7 137 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 MOGAT3Q86VF5 341 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 WBP1Q96G27 269 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 HES4Q9HCC6 221 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 NGBQ9NPG2 151 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 K7EQM0 130 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 M0QZK8 103 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 GGCTO75223 188 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 MPDU1O75352 247 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 CELA3AP09093 270 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 CASP6P55212 293 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 C10orf91Q5T1B1 145 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 SSX7Q7RTT5 188 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 WFDC8Q8IUA0 241 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 TIMM9Q9Y5J7 89 aa7.15□□□□□ -1.26
LIMCH1-216ENST00000512820 MPDZO75970 2070 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 IGHV3OR15-7A0A075B7D8 119 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 A0A1B0GW64 132 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 MARCH11A6NNE9 402 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 ZNF716A6NP11 495 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 CNIH1O95406 144 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 NRN1LQ496H8 165 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 DDA1Q9BW61 102 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 IL17BQ9UHF5 180 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 CBY1Q9Y3M2 126 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 WIPI2Q9Y4P8 454 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 ATXN7O15265 892 aaPredicted RBP7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 C1QL4Q86Z23 238 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 TXNDC17Q9BRA2 123 aa7.15□□□□□ -1.27
LIMCH1-216ENST00000512820 CAMPP49913 170 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 PAFAH1B2P68402 229 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 COX19Q49B96 90 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 ABLIM2Q6H8Q1 611 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 C5orf24Q7Z6I8 188 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 WDFY1Q8IWB7 410 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 HSPB9Q9BQS6 159 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 ODAMA1E959 279 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 SLC25A5P05141 298 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 HIST1H1BP16401 226 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 USF1P22415 310 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 TNFAIP6P98066 277 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 VAMP3Q15836 100 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 OR4X1Q8NH49 305 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 TMEM171Q8WVE6 324 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 ZDHHC16Q969W1 377 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 OTX1P32242 354 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 HES3Q5TGS1 186 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 GFI1BQ5VTD9 330 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 Q6ZN92 141 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 PRNDQ9UKY0 176 aa7.14□□□□□ -1.27
LIMCH1-216ENST00000512820 RPLP1P05386 114 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 ARL14EPLP0DKL9 152 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 ZNF600Q6ZNG1 722 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 NPCDR1Q9BY65 106 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 VSIRQ9H7M9 311 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 hADV38S2A0JD32 116 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 VENTXO95231 258 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 SLC35B1P78383 322 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 VMA21Q3ZAQ7 101 aa7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 LBHQ53QV2 105 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-216ENST00000512820 BHLHA15Q7RTS1 189 aaPredicted RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms