RNA–Protein interactions for RNA: ENST00000512229.6

PCDHA4-202, Transcript of protocadherin alpha 4, humanhuman

TSL 1 (best) BASIC

Gene PCDHA4, Length 4,163 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4-202ENST00000512229 IGHV1-69-2A0A0G2JMI3 117 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 MARCH11A6NNE9 402 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 FAM90A26D6RGX4 464 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 MMDQ15546 238 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 FAM78BQ5VT40 261 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 BAGE3Q86Y29 109 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 BAGE2Q86Y30 109 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 FAM208BQ5VWN6 2430 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 ZNF705GA8MUZ8 300 aaPredicted RBP11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 ID4P47928 161 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 B2MP61769 119 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 Q56UQ5 140 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 KHDC1LQ5JSQ8 128 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 HIF1ANQ9NWT6 349 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 OR51B2Q9Y5P1 312 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 SPG11Q96JI7 2443 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 CLEC3BP05452 202 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 ZNF735P0CB33 412 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 TMEM11P17152 192 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 ORM2P19652 201 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 TIMP3P35625 211 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 HIST1H3AP68431 136 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 RNFT1Q5M7Z0 435 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 LSM10Q969L4 123 aaKnown RBP11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 RNF24Q9Y225 148 aa11.1□□□□□ -0.63
PCDHA4-202ENST00000512229 CLDN34H7C241 214 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 C1QL1O75973 258 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 UCP1P25874 307 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 CD1BP29016 333 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 HABP2Q14520 560 aaPredicted RBP11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 TEPPQ6URK8 271 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 DBX2Q6ZNG2 339 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 SLC24A4Q8NFF2 622 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 GTF3AQ92664 365 aaKnown RBP11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 PCGF1Q9BSM1 259 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 MS4A7Q9GZW8 240 aaPredicted RBP11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 LPAR2Q9HBW0 351 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 LYRM2Q9NU23 88 aaPredicted RBP11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 TIMM9Q9Y5J7 89 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 OBSL1O75147 1896 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 DOPEY2Q9Y3R5 2298 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 TGOLN2O43493 480 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 FBP1P09467 338 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 TUSC1Q2TAM9 212 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 PRR27Q6MZM9 219 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 CCDC144NLQ6NUI1 221 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 FOXL2NBQ6ZUU3 175 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 OR1L4Q8NGR5 311 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 IGHV3-72A0A0B4J1Y9 119 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 PROB1E7EW31 1015 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 ERVH48-1M5A8F1 160 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 S1PR2O95136 353 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 IGHG3P01860 377 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 Q6ZS92 163 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 SMIM15Q7Z3B0 74 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 SLC35E3Q7Z769 313 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 MRPL30Q8TCC3 161 aaKnown RBP11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 STARD4Q96DR4 205 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 RSRP1Q9BUV0 290 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 NPVFQ9HCQ7 196 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 ABCA1O95477 2261 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 DLL1O00548 723 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 ARL3P36405 182 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 TNFRSF9Q07011 255 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 SPSB4Q96A44 273 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 RSG1Q9BU20 258 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 SEC11CQ9BY50 192 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 TMEM106BQ9NUM4 274 aa11.09□□□□□ -0.63
PCDHA4-202ENST00000512229 COL4A4P53420 1690 aaPredicted RBP11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 NAT1P18440 290 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 SSTP61278 116 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 TMEM30BQ3MIR4 351 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 NRIP2Q9BQI9 281 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 GINS3Q9BRX5 216 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 VAX2Q9UIW0 290 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 IGHV1-18A0A0C4DH31 117 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 CTXND1A0A1B0GTU2 59 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 ERVFC1-1P60608 527 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 SSX2Q16385 188 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 NHLRC3Q5JS37 347 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 LAMTOR1Q6IAA8 161 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 OR13A1Q8NGR1 328 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 RBKSQ9H477 322 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 IGKV1D-8A0A087WSZ0 117 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 C17orf100A8MU93 164 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 H1FOOQ8IZA3 346 aaPredicted RBP11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 TMEM140Q9NV12 185 aa11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 TECRQ9NZ01 308 aaKnown RBP11.08□□□□□ -0.64
PCDHA4-202ENST00000512229 IGKV1-27A0A075B6S5 117 aa11.07□□□□□ -0.64
PCDHA4-202ENST00000512229 ZNF320A2RRD8 509 aa11.07□□□□□ -0.64
PCDHA4-202ENST00000512229 MPTX1A8MV57 137 aa11.07□□□□□ -0.64
PCDHA4-202ENST00000512229 F2RL2O00254 374 aa11.07□□□□□ -0.64
PCDHA4-202ENST00000512229 RND3P61587 244 aa11.07□□□□□ -0.64
PCDHA4-202ENST00000512229 HSPE1P61604 102 aaKnown RBP11.07□□□□□ -0.64
PCDHA4-202ENST00000512229 SIGIRRQ6IA17 410 aa11.07□□□□□ -0.64
PCDHA4-202ENST00000512229 RNF144BQ7Z419 303 aa11.07□□□□□ -0.64
PCDHA4-202ENST00000512229 FAM24BQ8N5W8 94 aa11.07□□□□□ -0.64
PCDHA4-202ENST00000512229 SNRNP40Q96DI7 357 aaKnown RBP11.07□□□□□ -0.64
PCDHA4-202ENST00000512229 OR4C12Q96R67 309 aa11.07□□□□□ -0.64
PCDHA4-202ENST00000512229 TMUB1Q9BVT8 246 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms