RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 HIST1H3AP68431 136 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 SLC35A1P78382 337 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 H3F3AP84243 136 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OC90Q02509 493 aaPredicted RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 PLCXD2Q0VAA5 305 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 PJVKQ0ZLH3 352 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR2F1Q13607 317 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 GNMTQ14749 295 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 PMVKQ15126 192 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 SSX1Q16384 188 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 MRPL23Q16540 153 aaKnown RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 SNRNP35Q16560 246 aaKnown RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 HIST3H3Q16695 136 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 SLC25A52Q3SY17 297 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 TMEM255AQ5JRV8 349 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 Q5W150 140 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR10K2Q6IF99 312 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 AGTRAPQ6RW13 159 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ALKAL2Q6UX46 152 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 HEPN1Q6WQI6 88 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ZNF705AQ6ZN79 300 aaPredicted RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 NEGR1Q7Z3B1 354 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 TSEN54Q7Z6J9 526 aaKnown RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 ZNF429Q86V71 674 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 TMEM183AQ8IXX5 376 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR8I2Q8N0Y5 310 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 FTMTQ8N4E7 242 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 FER1L6-AS1Q8NA97 138 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 SUMF2Q8NBJ7 301 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ZNF555Q8NEP9 628 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 SDR9C7Q8NEX9 313 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR5AU1Q8NGC0 362 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR11H7Q8NGC8 314 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR10G4Q8NGN3 311 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR10G9Q8NGN4 311 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR1N2Q8NGR9 330 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR1J4Q8NGS1 313 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR2AE1Q8NHA4 323 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ZNRF2Q8NHG8 242 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 FAM110BQ8TC76 370 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR8D1Q8WZ84 308 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 TMEM106AQ96A25 262 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 APOBEC3DQ96AK3 386 aaPredicted RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 DNAJC30Q96LL9 226 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ZNF75AQ96N20 296 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 CIB3Q96Q77 187 aaPredicted RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 LYSMD1Q96S90 227 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 P2RX4Q99571 388 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 MGLLQ99685 303 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H2BLQ99880 126 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 GINS3Q9BRX5 216 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 DOHHQ9BU89 302 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 TM2D1Q9BX74 207 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 PECRQ9BY49 303 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 SELENOIQ9C0D9 397 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 MAP1LC3BQ9GZQ8 125 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 CHRNA10Q9GZZ6 450 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 DUSP21Q9H596 190 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 RNF167Q9H6Y7 350 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 GPR84Q9NQS5 396 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 UQCC1Q9NVA1 299 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ASF1BQ9NVP2 202 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 DMAC2Q9NW81 257 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ZNF586Q9NXT0 402 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 BET1LQ9NYM9 111 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 TAS2R8Q9NYW2 309 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 SLC23A2Q9UGH3 650 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 NAT8BQ9UHF3 227 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ZNF222Q9UK12 451 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 TBX21Q9UL17 535 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 FZR1Q9UM11 496 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 TNFSF18Q9UNG2 199 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 HS3ST2Q9Y278 367 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 MRPS16Q9Y3D3 137 aaKnown RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 SNX10Q9Y5X0 201 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 UBIAD1Q9Y5Z9 338 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 V9GYH0 126 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ADGRB2O60241 1585 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ABCA3Q99758 1704 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 SHANK3Q9BYB0 1731 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 CACNA1SQ13698 1873 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 FER1L6Q2WGJ9 1857 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 MYO5AQ9Y4I1 1855 aaKnown RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 ABCC1P33527 1531 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ASXL1Q8IXJ9 1541 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 USP54Q70EL1 1684 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ATAD5Q96QE3 1844 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 PHRF1Q9P1Y6 1649 aaKnown RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 RBBP6Q7Z6E9 1792 aaKnown RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 A0A087WUU8 490 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 A0A087WWC5 75 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 A0A0G2JMM0 328 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 CENPVL3A0A0U1RRI6 287 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ZNF816-ZNF321PA0A0X1KG74 233 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 A0A1B0GUS0 222 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 A0A1B0GX51 115 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 A0A1W2PPB8 328 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 A0A1W2PRS3 328 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 FAM159BA6NKW6 160 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ZNF705GA8MUZ8 300 aaPredicted RBP1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms