RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 HIST1H2BLQ99880 126 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 WDR61Q9GZS3 305 aaKnown RBP13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 NDUFB3O43676 98 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 IGHV2-70P01814 119 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 SCTP09683 121 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 C10orf128Q5T292 105 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 WDR73Q6P4I2 378 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 ZNF826PQ6ZT77 177 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 OR4C12Q96R67 309 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 OR5D13Q8NGL4 314 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 OR4X1Q8NH49 305 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 PARLQ9H300 379 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 OR2W1Q9Y3N9 320 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 KLF7O75840 302 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 OR5G3P0C626 314 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 ZNF738Q8NE65 137 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 TMPRSS2O15393 492 aa13.96□□□□□ -0.17
CCDC88B-209ENST00000494080 PDE6DO43924 150 aa13.96□□□□□ -0.17
CCDC88B-209ENST00000494080 SRP14P37108 136 aaKnown RBP13.96□□□□□ -0.17
CCDC88B-209ENST00000494080 UCP2P55851 309 aa13.96□□□□□ -0.17
CCDC88B-209ENST00000494080 SLC35B1P78383 322 aa13.96□□□□□ -0.17
CCDC88B-209ENST00000494080 RTP5Q14D33 572 aa13.96□□□□□ -0.17
CCDC88B-209ENST00000494080 MED13LQ71F56 2210 aa13.96□□□□□ -0.17
CCDC88B-209ENST00000494080 EFNA2O43921 213 aa13.96□□□□□ -0.18
CCDC88B-209ENST00000494080 FDCSPQ8NFU4 85 aa13.96□□□□□ -0.18
CCDC88B-209ENST00000494080 SSMEM1Q8WWF3 244 aa13.96□□□□□ -0.18
CCDC88B-209ENST00000494080 M0R2Z0 102 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 TNFRSF9Q07011 255 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 JOSD1Q15040 202 aaPredicted RBP13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 LRRC10Q5BKY1 277 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 FAM162BQ5T6X4 162 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 CHRNB4P30926 498 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 FGF12P61328 243 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 TAF15Q92804 592 aaKnown RBP eCLIP13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 Q96M66 194 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 MRPL13Q9BYD1 178 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 RNF122Q9H9V4 155 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 CLN8Q9UBY8 286 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 FOXD3Q9UJU5 478 aaPredicted RBP13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 IGHV3OR15-7A0A075B7D8 119 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 S100A7P31151 101 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 BRS3P32247 399 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 SUB1P53999 127 aaKnown RBP eCLIP13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 ERHP84090 104 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 SELENOHQ8IZQ5 122 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 FADS6Q8N9I5 356 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 TMEM54Q969K7 222 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 ATXN7O15265 892 aaPredicted RBP13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 KBTBD11O94819 623 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 CD99P14209 185 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 EGR1P18146 543 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 Q56UQ5 140 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 RCC1LQ96I51 464 aaKnown RBP13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 PPP1R14DQ9NXH3 145 aa13.95□□□□□ -0.18
CCDC88B-209ENST00000494080 FER1L5A0AVI2 2057 aa13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 RHOBP62745 196 aa13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 MST1LQ2TV78 715 aa13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 SPATA45Q537H7 98 aa13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 MARS2Q96GW9 593 aaKnown RBP13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 ZNF703Q9H7S9 590 aaPredicted RBP13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 HPRT1P00492 218 aa13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 SUPT4H1P63272 117 aaKnown RBP13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 GPR146Q96CH1 333 aa13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 LRFN3Q9BTN0 628 aa13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 ERVFRD-1P60508 538 aa13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 FRMPD3Q5JV73 1810 aa13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 FANCMQ8IYD8 2048 aa13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 WDR87Q6ZQQ6 2873 aa13.94□□□□□ -0.18
CCDC88B-209ENST00000494080 C9orf172C9J069 976 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 ZFP36L1Q07352 338 aaKnown RBP13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 ICAM4Q14773 271 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 HIST3H3Q16695 136 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 LEMD1Q68G75 181 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 WFDC1Q9HC57 220 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 DNAJC4Q9NNZ3 241 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 KLF2Q9Y5W3 355 aaPredicted RBP13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 HELZP42694 1942 aaKnown RBP13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 DOCK10Q96BY6 2186 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 LOC102723996A0A087X1L8 192 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 G6PCP35575 357 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 RAB7AP51149 207 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 C1QL4Q86Z23 238 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 OR4B1Q8NGF8 309 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 OR5R1Q8NH85 324 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 CLDND2Q8NHS1 167 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 ABHD14BQ96IU4 210 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 WASHC3Q9Y3C0 194 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 K7N7A8 449 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 CLPSP04118 112 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 OR8G5Q8NG78 346 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 OR6C3Q9NZP0 311 aa13.93□□□□□ -0.18
CCDC88B-209ENST00000494080 SFTPCP11686 197 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 MPZP25189 248 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 CEBPDP49716 269 aaPredicted RBP13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 MOB3BQ86TA1 216 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 ABCA4P78363 2273 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 CENPFP49454 3210 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 OOEPA6NGQ2 149 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 ZNF883P0CG24 379 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 NUTF2P61970 127 aaKnown RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms