RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 BRS3P32247 399 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 OR1L1Q8NH94 360 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 C10orf35Q96D05 121 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 TAAR6Q96RI8 345 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 SSBP3Q9BWW4 388 aaPredicted RBP11.56□□□□□ -0.56
USP42-206ENST00000479544 A0A087WWC5 75 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 TOX3O15405 576 aaPredicted RBP11.55□□□□□ -0.56
USP42-206ENST00000479544 EFNA2O43921 213 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 NAPSAO96009 420 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 OIT3Q8WWZ8 545 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 FAM131CQ96AQ9 280 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 KLF2Q9Y5W3 355 aaPredicted RBP11.55□□□□□ -0.56
USP42-206ENST00000479544 IGHV2-5P01817 119 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 CYP2G1PQ6ZSU1 146 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 SPEM1Q8N4L4 309 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 NUDT16L1Q9BRJ7 211 aaKnown RBP11.55□□□□□ -0.56
USP42-206ENST00000479544 IGHV3-48P01763 117 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 SRIP30626 198 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 TFF3Q07654 80 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 ATP6V1FQ16864 119 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 AARDQ4LEZ3 155 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 KCNE4Q8WWG9 221 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 PLAUP00749 431 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 LIFP15018 202 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 FGF12P61328 243 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 QRFPP83859 136 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 SRSF4Q08170 494 aaKnown RBP11.55□□□□□ -0.56
USP42-206ENST00000479544 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.55□□□□□ -0.56
USP42-206ENST00000479544 DOLPP1Q86YN1 238 aa11.55□□□□□ -0.56
USP42-206ENST00000479544 IGKV1-12A0A0C4DH73 117 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 IGKV1D-12P01611 117 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 ARL14EPLP0DKL9 152 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 GZMBP10144 247 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 RPL24P83731 157 aaKnown RBP11.54□□□□□ -0.56
USP42-206ENST00000479544 GCSAMLQ5JQS6 135 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 ABHD12Q8N2K0 398 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 FAM89BQ8N5H3 189 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 RBM14Q96PK6 669 aaKnown RBP11.54□□□□□ -0.56
USP42-206ENST00000479544 P2RX4Q99571 388 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 MRPL13Q9BYD1 178 aaKnown RBP11.54□□□□□ -0.56
USP42-206ENST00000479544 C19orf67A6NJJ6 358 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 COX7A2P2O60397 106 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 SLC23A3Q6PIS1 610 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 DMRTC2Q8IXT2 367 aaPredicted RBP11.54□□□□□ -0.56
USP42-206ENST00000479544 OR2Z1Q8NG97 314 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 TM2D1Q9BX74 207 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 SEBOXQ9HB31 216 aaPredicted RBP11.54□□□□□ -0.56
USP42-206ENST00000479544 DLL3Q9NYJ7 618 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 PRRC2CQ9Y520 2896 aaKnown RBP11.54□□□□□ -0.56
USP42-206ENST00000479544 GTF3C1Q12789 2109 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 E9PLN8 166 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 GALR2O43603 387 aaPredicted RBP11.54□□□□□ -0.56
USP42-206ENST00000479544 PDE6DO43924 150 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 S1PR2O95136 353 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 UBE2L3P68036 154 aaKnown RBP11.54□□□□□ -0.56
USP42-206ENST00000479544 OR2J1Q9GZK6 312 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 PXMP4Q9Y6I8 212 aa11.54□□□□□ -0.56
USP42-206ENST00000479544 CD46P15529 392 aa11.53□□□□□ -0.56
USP42-206ENST00000479544 GNB1P62873 340 aa11.53□□□□□ -0.56
USP42-206ENST00000479544 PQLC2Q6ZP29 291 aa11.53□□□□□ -0.56
USP42-206ENST00000479544 SRXN1Q9BYN0 137 aa11.53□□□□□ -0.56
USP42-206ENST00000479544 WIPI2Q9Y4P8 454 aa11.53□□□□□ -0.56
USP42-206ENST00000479544 SERF1AO75920 110 aa11.53□□□□□ -0.56
USP42-206ENST00000479544 ORM2P19652 201 aa11.53□□□□□ -0.56
USP42-206ENST00000479544 MPZP25189 248 aa11.53□□□□□ -0.56
USP42-206ENST00000479544 IL3RAP26951 378 aa11.53□□□□□ -0.56
USP42-206ENST00000479544 NUTF2P61970 127 aaKnown RBP11.53□□□□□ -0.56
USP42-206ENST00000479544 ZNF738Q8NE65 137 aa11.53□□□□□ -0.56
USP42-206ENST00000479544 C18orf12Q96KH6 178 aa11.53□□□□□ -0.56
USP42-206ENST00000479544 LAMA2P24043 3122 aaKnown RBP11.53□□□□□ -0.56
USP42-206ENST00000479544 IGHMP01871 453 aa11.53□□□□□ -0.56
USP42-206ENST00000479544 PARD6GQ9BYG4 376 aaPredicted RBP11.53□□□□□ -0.56
USP42-206ENST00000479544 SPRY3O43610 288 aa11.52□□□□□ -0.56
USP42-206ENST00000479544 UCP1P25874 307 aa11.52□□□□□ -0.56
USP42-206ENST00000479544 LTBRP36941 435 aa11.52□□□□□ -0.56
USP42-206ENST00000479544 MMDQ15546 238 aa11.52□□□□□ -0.56
USP42-206ENST00000479544 GABRA6Q16445 453 aa11.52□□□□□ -0.56
USP42-206ENST00000479544 C1QL4Q86Z23 238 aa11.52□□□□□ -0.56
USP42-206ENST00000479544 SH2D2AQ9NP31 389 aa11.52□□□□□ -0.56
USP42-206ENST00000479544 OR6C3Q9NZP0 311 aa11.52□□□□□ -0.56
USP42-206ENST00000479544 PPIAL4AQ9Y536 164 aa11.52□□□□□ -0.56
USP42-206ENST00000479544 RHBDL1O75783 438 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 CRYBB3P26998 211 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 SRD5A2P31213 254 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 UQCRFS1P47985 274 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 RNF166Q96A37 237 aaPredicted RBP11.52□□□□□ -0.57
USP42-206ENST00000479544 SNAI2O43623 268 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 SRP14P37108 136 aaKnown RBP11.52□□□□□ -0.57
USP42-206ENST00000479544 DRAM1Q8N682 238 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 ZNF525Q8N782 197 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 RNF2Q99496 336 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 WNT5BQ9H1J7 359 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 LIME1Q9H400 295 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 COL6A6A6NMZ7 2263 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 NCOA6Q14686 2063 aaPredicted RBP11.52□□□□□ -0.57
USP42-206ENST00000479544 OR5B21A6NL26 309 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 HAND1O96004 215 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 SLC25A5P05141 298 aaKnown RBP11.52□□□□□ -0.57
USP42-206ENST00000479544 CD99P14209 185 aa11.52□□□□□ -0.57
USP42-206ENST00000479544 RPL31P62899 125 aaKnown RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms