RNA–Protein interactions for RNA: ENST00000474871.5

NPHP3-206, Transcript of nephrocystin 3, human

TSL 2

Gene NPHP3, Length 4,493 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPHP3-206	ENST00000474871	KMT2E	Q8IZD2	1858 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	COL4A3	Q01955	1670 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	MRPL33	O75394	65 aa	Known RBP	4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	PPP1R3D	O95685	299 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	SP9	P0CG40	484 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	EDNRA	P25101	427 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	GLIPR1	P48060	266 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	INSL3	P51460	131 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	RAE1	P78406	368 aa	Known RBP	4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	IAH1	Q2TAA2	248 aa	Predicted RBP	4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	FAM219B	Q5XKK7	198 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	DNM1P46	Q6ZS02	220 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871		Q6ZUT4	128 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	TRAPPC6B	Q86SZ2	158 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	SCCPDH	Q8NBX0	429 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	OR51G1	Q8NGK1	321 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	DLL3	Q9NYJ7	618 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	TMEM178B	H3BS89	294 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	HRAS	P01112	189 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	KRAS	P01116	189 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	SNCA	P37840	140 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	ZNF92	Q03936	586 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	FMOD	Q06828	376 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	MFGE8	Q08431	387 aa	Predicted RBP	4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	FA2H	Q7L5A8	372 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	ZNF367	Q7RTV3	350 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	OR6T1	Q8NGN1	323 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	OR1J1	Q8NGS3	322 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	OR5AK2	Q8NH90	309 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	OSR1	Q8TAX0	266 aa	Predicted RBP	4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	CT55	Q8WUE5	264 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	NEURL3	Q96EH8	262 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	C16orf92	Q96LL3	132 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	IMMP2L	Q96T52	175 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	IKZF5	Q9H5V7	419 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	TMEM106B	Q9NUM4	274 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	OR1A1	Q9P1Q5	309 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	CES1P1	Q9UKY3	287 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	VDAC3	Q9Y277	283 aa		4.08	□□□□□ -1.76
NPHP3-206	ENST00000474871	MUC22	E2RYF6	1773 aa	Predicted RBP	4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	EEF1E1-BLOC1S5	C9J1V9	151 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	NPIPB6	E9PJ23	425 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	RHOD	O00212	210 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	EEF1E1	O43324	174 aa	Known RBP	4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	EIF4E	P06730	217 aa	Known RBP	4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	ELK1	P19419	428 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	TNFRSF1B	P20333	461 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	PRKACG	P22612	351 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	ATP4B	P51164	291 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	PRR30	Q53SZ7	412 aa	Predicted RBP	4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	CLEC12A	Q5QGZ9	265 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	OR2T5	Q6IEZ7	315 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	GATD1	Q8NB37	220 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	OR6N2	Q8NGY6	317 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	OR2T29	Q8NH02	315 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	PIFO	Q8TCI5	191 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	ACY3	Q96HD9	319 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	DIRAS2	Q96HU8	199 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	TMEM204	Q9BSN7	226 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	RETN	Q9HD89	108 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	GPATCH2	Q9NW75	528 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	LAMA2	P24043	3122 aa	Known RBP	4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	TPR	P12270	2363 aa	Known RBP	4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	ATG2B	Q96BY7	2078 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	TRAV17	A0A0B4J275	112 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	LOC107986453	A0A1B0GWG9	222 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	LMX1B	O60663	402 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	GNG4	P50150	75 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	ERVK-16	P61578	105 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	GDPGP1	Q6ZNW5	385 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	C1QL2	Q7Z5L3	287 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	ZNF485	Q8NCK3	441 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	OR52P1P	Q8NH57	321 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	PLPPR1	Q8TBJ4	325 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	TMEM170A	Q8WVE7	144 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	SLAMF6	Q96DU3	332 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	SLC25A38	Q96DW6	304 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	DERL3	Q96Q80	235 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	POLR2J2	Q9GZM3	115 aa	Known RBP	4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	TXNL4B	Q9NX01	149 aa	Known RBP	4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	UQCR10	Q9UDW1	63 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	GATA2	P23769	480 aa	Predicted RBP	4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	AGTR1	P30556	359 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	HILS1	P60008	231 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	ZC2HC1B	Q5TFG8	222 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	TMEM184A	Q6ZMB5	413 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	PIANP	Q8IYJ0	282 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	C1orf174	Q8IYL3	243 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	SSC4D	Q8WTU2	575 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	LIN37	Q96GY3	246 aa	Predicted RBP	4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	ZNF471	Q9BX82	626 aa	Predicted RBP	4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	TMEM222	Q9H0R3	208 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	TMEM242	Q9NWH2	141 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	ANKRD12	Q6UB98	2062 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	MAP1LC3B2	A6NCE7	125 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	GAGE12J	A6NER3	117 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	TAAR5	O14804	337 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	GAGE7	O76087	117 aa		4.07	□□□□□ -1.76
NPHP3-206	ENST00000474871	SFT2D2	O95562	160 aa		4.07	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms