RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 TMBIM1Q969X1 311 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 PACRGQ96M98 296 aaPredicted RBP1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 DHRS9Q9BPW9 319 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 PECRQ9BY49 303 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 DERL2Q9GZP9 239 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 HDHD2Q9H0R4 259 aa1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 PCYT1BQ9Y5K3 369 aaPredicted RBP1.11□□□□□ -2.23
CCDC88A-212ENST00000474059 CHD5Q8TDI0 1954 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 COL11A1P12107 1806 aaPredicted RBP1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 NAV1Q8NEY1 1877 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 REREQ9P2R6 1566 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 IGHV3-15A0A0B4J1V0 119 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 MDFIC2A0A1B0GVS7 189 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 TMEM235A6NFC5 223 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 C11orf86A6NJI1 115 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 OR5K4A6NMS3 321 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 S1PR2O95136 353 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 TPM3P06753 285 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 IFI30P13284 250 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 EMP2P54851 167 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 TMEM33P57088 247 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 SNAP25P60880 206 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 CXCR4P61073 352 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 BTN3A2P78410 334 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 MGAT3Q09327 533 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 EBPQ15125 230 aaKnown RBP1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 LRRC34Q8IZ02 419 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 CNEP1R1Q8N9A8 125 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 RPS4Y2Q8TD47 263 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 EEF1AKMT1Q8WVE0 214 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 FGF13Q92913 245 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 RNASE6Q93091 150 aaKnown RBP1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 CPNE2Q96FN4 548 aaPredicted RBP1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 KCTD7Q96MP8 289 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 OR52B2Q96RD2 323 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 MIEN1Q9BRT3 115 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 ZNF471Q9BX82 626 aaPredicted RBP1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 NKX6-2Q9C056 277 aaPredicted RBP1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 SLC2A9Q9NRM0 540 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 C15orf41Q9Y2V0 281 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 ATP6V1DQ9Y5K8 247 aa1.1□□□□□ -2.23
CCDC88A-212ENST00000474059 WDR90Q96KV7 1748 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 A0A0G2JQZ4 141 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 C5orf49A4QMS7 147 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 H3BRN7 92 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 UBE2L6O14933 153 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 GNRH2O43555 120 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 MT-CO2P00403 227 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 IGHV1-69P01742 117 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 IGKV1-16P04430 117 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 COX5BP10606 129 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 ALOX5APP20292 161 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 RPS24P62847 133 aaKnown RBP1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 TPM4P67936 248 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 HLA-DRB3P79483 266 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 MED21Q13503 144 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 GLT6D1Q7Z4J2 308 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 SPATA12Q7Z6I5 190 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 NAA40Q86UY6 237 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 SLC35F6Q8N357 371 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 Q8N402 240 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 TMEM156Q8N614 296 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 DAND5Q8N907 189 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 MS4A6EQ96DS6 147 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 Q9BRP9 147 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 TMEM109Q9BVC6 243 aa1.09□□□□□ -2.23
CCDC88A-212ENST00000474059 NYNRINQ9P2P1 1898 aaKnown RBP1.09□□□□□ -2.24
CCDC88A-212ENST00000474059 KDM5BQ9UGL1 1544 aa1.09□□□□□ -2.24
CCDC88A-212ENST00000474059 DSCAMO60469 2012 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 TMED7-TICAM2A0A0A6YYA0 188 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 A0A0A6YYH2 397 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 OR6C6A6NF89 314 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 A6NJ64 397 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 HLA-DRAP01903 254 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 ZNF728P0DKX0 622 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 XCL1P47992 114 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 CDC34P49427 236 aaPredicted RBP1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 CTBP2P56545 445 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 TAS2R30P59541 319 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 PPP1R1AQ13522 171 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 COTL1Q14019 142 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 JOSD1Q15040 202 aaPredicted RBP1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 LGALS9BQ3B8N2 356 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 SAPCD1Q5SSQ6 148 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 N4BP2L1Q5TBK1 243 aaPredicted RBP1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 CST9Q5W186 159 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 AGTRAPQ6RW13 159 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 FAM151BQ6UXP7 276 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 OTUD6BQ8N6M0 293 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 PACRGLQ8N7B6 248 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 ZNF283Q8N7M2 679 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 OR4X1Q8NH49 305 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 CLDND2Q8NHS1 167 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 CMTM5Q96DZ9 223 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 ANKRD36BP1Q96IX9 119 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 DRC3Q9H069 523 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 KLK5Q9Y337 293 aaPredicted RBP1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 FAM215AQ9Y5M1 114 aa1.08□□□□□ -2.24
CCDC88A-212ENST00000474059 DICER1Q9UPY3 1922 aaKnown RBP1.08□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms