RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 CRIP2P52943 208 aaPredicted RBP13.99□□□□□ -0.17
UPF3A-203ENST00000474056 RPS16P62249 146 aaKnown RBP13.99□□□□□ -0.17
UPF3A-203ENST00000474056 PSG5Q15238 335 aa13.99□□□□□ -0.17
UPF3A-203ENST00000474056 HACD4Q5VWC8 232 aa13.99□□□□□ -0.17
UPF3A-203ENST00000474056 ZNF660Q6AZW8 331 aaPredicted RBP13.99□□□□□ -0.17
UPF3A-203ENST00000474056 H1FOOQ8IZA3 346 aaPredicted RBP13.99□□□□□ -0.17
UPF3A-203ENST00000474056 SLC25A38Q96DW6 304 aa13.99□□□□□ -0.17
UPF3A-203ENST00000474056 CLCC1Q96S66 551 aa13.99□□□□□ -0.17
UPF3A-203ENST00000474056 METTL1Q9UBP6 276 aaKnown RBP13.99□□□□□ -0.17
UPF3A-203ENST00000474056 GAB2Q9UQC2 676 aa13.99□□□□□ -0.17
UPF3A-203ENST00000474056 SCGNO76038 276 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 SPDEFO95238 335 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 IGLV1-40P01703 118 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 HOXD3P31249 432 aaPredicted RBP13.98□□□□□ -0.17
UPF3A-203ENST00000474056 RAB25P57735 213 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 KRTAP10-11P60412 298 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 KIAA0141Q14154 515 aaPredicted RBP13.98□□□□□ -0.17
UPF3A-203ENST00000474056 C19orf54Q5BKX5 351 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 IDNKQ5T6J7 187 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 MINDY2Q8NBR6 621 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 C4orf3Q8WVX3 66 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 FAM103A1Q9BTL3 118 aaKnown RBP13.98□□□□□ -0.17
UPF3A-203ENST00000474056 ST6GALNAC5Q9BVH7 336 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 GNB4Q9HAV0 340 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 TPSG1Q9NRR2 321 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 RBM7Q9Y580 266 aaKnown RBP13.98□□□□□ -0.17
UPF3A-203ENST00000474056 A3GALT2U3KPV4 340 aa13.98□□□□□ -0.17
UPF3A-203ENST00000474056 A0A1W2PN81 502 aa13.97□□□□□ -0.17
UPF3A-203ENST00000474056 SOX15O60248 233 aa13.97□□□□□ -0.17
UPF3A-203ENST00000474056 CA2P00918 260 aa13.97□□□□□ -0.17
UPF3A-203ENST00000474056 EGR2P11161 476 aaPredicted RBP13.97□□□□□ -0.17
UPF3A-203ENST00000474056 CHRNA7P36544 502 aa13.97□□□□□ -0.17
UPF3A-203ENST00000474056 GNG2P59768 71 aa13.97□□□□□ -0.17
UPF3A-203ENST00000474056 ZNF491Q8N8L2 437 aa13.97□□□□□ -0.17
UPF3A-203ENST00000474056 ABHD5Q8WTS1 349 aa13.97□□□□□ -0.17
UPF3A-203ENST00000474056 FLYWCH2Q96CP2 140 aaKnown RBP13.97□□□□□ -0.17
UPF3A-203ENST00000474056 TSNAXQ99598 290 aaKnown RBP13.97□□□□□ -0.17
UPF3A-203ENST00000474056 J3QRK9 145 aa13.96□□□□□ -0.17
UPF3A-203ENST00000474056 SLC25A17O43808 307 aa13.96□□□□□ -0.17
UPF3A-203ENST00000474056 SSX5O60225 188 aa13.96□□□□□ -0.17
UPF3A-203ENST00000474056 IGLV2-23P01705 113 aa13.96□□□□□ -0.17
UPF3A-203ENST00000474056 RAB9AP51151 201 aa13.96□□□□□ -0.17
UPF3A-203ENST00000474056 SCAND1P57086 179 aa13.96□□□□□ -0.17
UPF3A-203ENST00000474056 EGFEM1PQ0D2K5 195 aa13.96□□□□□ -0.17
UPF3A-203ENST00000474056 TMEM65Q6PI78 240 aa13.96□□□□□ -0.17
UPF3A-203ENST00000474056 TSPAN14Q8NG11 270 aa13.96□□□□□ -0.17
UPF3A-203ENST00000474056 MCRIP2Q9BUT9 160 aaKnown RBP13.96□□□□□ -0.17
UPF3A-203ENST00000474056 DCSTAMPQ9H295 470 aa13.96□□□□□ -0.17
UPF3A-203ENST00000474056 NUBP2Q9Y5Y2 271 aa13.96□□□□□ -0.17
UPF3A-203ENST00000474056 ETV7Q9Y603 341 aa13.96□□□□□ -0.17
UPF3A-203ENST00000474056 A0A087WXM4 84 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 I3L521 148 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 TNFAIP8O95379 198 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 NFYAP23511 347 aaPredicted RBP13.95□□□□□ -0.18
UPF3A-203ENST00000474056 PITPNAQ00169 270 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 FHL3Q13643 280 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 TIMM50Q3ZCQ8 353 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 ZNF562Q6V9R5 426 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 PPP1R27Q86WC6 154 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 BVESQ8NE79 360 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 OR11H1Q8NG94 326 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 CASTOR1Q8WTX7 329 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 YIPF6Q96EC8 236 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 UBE2E2Q96LR5 201 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 HARBI1Q96MB7 349 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 OR5B12Q96R08 314 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 GPR61Q9BZJ8 451 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 FOXA2Q9Y261 457 aaPredicted RBP13.95□□□□□ -0.18
UPF3A-203ENST00000474056 VSIG4Q9Y279 399 aa13.95□□□□□ -0.18
UPF3A-203ENST00000474056 LINC00473A8K010 186 aa13.94□□□□□ -0.18
UPF3A-203ENST00000474056 K7EIL1 84 aa13.94□□□□□ -0.18
UPF3A-203ENST00000474056 ARPC1BO15143 372 aaKnown RBP13.94□□□□□ -0.18
UPF3A-203ENST00000474056 DUTP33316 252 aaKnown RBP13.94□□□□□ -0.18
UPF3A-203ENST00000474056 SSBP2P81877 361 aaPredicted RBP13.94□□□□□ -0.18
UPF3A-203ENST00000474056 UNQ5815/PRO19632Q6UWF5 114 aa13.94□□□□□ -0.18
UPF3A-203ENST00000474056 TCTEX1D1Q8N7M0 179 aa13.94□□□□□ -0.18
UPF3A-203ENST00000474056 DDB2Q92466 427 aa13.94□□□□□ -0.18
UPF3A-203ENST00000474056 DPF1Q92782 380 aa13.94□□□□□ -0.18
UPF3A-203ENST00000474056 TRAV18A0A075B6X5 111 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 WI2-2373I1.2A0A1W2PRP0 233 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 SRRM4A7MD48 611 aaKnown RBP13.93□□□□□ -0.18
UPF3A-203ENST00000474056 AIREO43918 545 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 CRYGBP07316 175 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 CTXN2P0C2S0 81 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 LSM3P62310 102 aaKnown RBP13.93□□□□□ -0.18
UPF3A-203ENST00000474056 GNB1P62873 340 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 TMEM267Q0VDI3 215 aaPredicted RBP13.93□□□□□ -0.18
UPF3A-203ENST00000474056 TMEM177Q53S58 311 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 ASPHD1Q5U4P2 390 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 CNIH2Q6PI25 160 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 ZNF645Q8N7E2 425 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 LFNGQ8NES3 379 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 OR5M8Q8NGP6 311 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 ARPC1AQ92747 370 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 VCX3AQ9NNX9 186 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 ANXA10Q9UJ72 324 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 SPATA2Q9UM82 520 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 OR2W1Q9Y3N9 320 aa13.93□□□□□ -0.18
UPF3A-203ENST00000474056 IGKV1D-13A0A0B4J2D9 117 aa13.92□□□□□ -0.18
UPF3A-203ENST00000474056 SHOXO15266 292 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms