RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 DOK5Q9P104 306 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 TENM1Q9UKZ4 2725 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 SDK1Q7Z5N4 2213 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 TRAV41A0A0B4J266 112 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 FABP12A6NFH5 140 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 METTL15A6NJ78 407 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 FTCDNL1E5RQL4 147 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 NDUFS6O75380 124 aaKnown RBP1.16□□□□□ -2.22
USP40-209ENST00000452724 PET100P0DJ07 73 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 GRPRP30550 384 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 RPL14P50914 215 aaKnown RBP1.16□□□□□ -2.22
USP40-209ENST00000452724 EMP2P54851 167 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 H2BFSP57053 126 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 RELAQ04206 551 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 TMEM267Q0VDI3 215 aaPredicted RBP1.16□□□□□ -2.22
USP40-209ENST00000452724 PABPC1L2AQ5JQF8 200 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 DRAM2Q6UX65 266 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 PLEKHG7Q6ZR37 379 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 LHFPL1Q86WI0 220 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 BOD1L2Q8IYS8 172 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 C10orf126Q8N4M7 172 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 OR5J2Q8NH18 312 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 SLC35G5Q96KT7 338 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 PACRGQ96M98 296 aaPredicted RBP1.16□□□□□ -2.22
USP40-209ENST00000452724 SPZ1Q9BXG8 430 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 MRPL32Q9BYC8 188 aaKnown RBP1.16□□□□□ -2.22
USP40-209ENST00000452724 EURLQ9NYK6 297 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 TP53TG1Q9Y2A0 90 aa1.16□□□□□ -2.22
USP40-209ENST00000452724 FN1P02751 2386 aaKnown RBP1.16□□□□□ -2.22
USP40-209ENST00000452724 KDM5BQ9UGL1 1544 aa1.15□□□□□ -2.22
USP40-209ENST00000452724 CHD2O14647 1828 aaKnown RBP1.15□□□□□ -2.22
USP40-209ENST00000452724 SLX4Q8IY92 1834 aa1.15□□□□□ -2.22
USP40-209ENST00000452724 KMT2BQ9UMN6 2715 aaPredicted RBP1.15□□□□□ -2.23
USP40-209ENST00000452724 A0A1W2PQD3 144 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 SMLR1H3BR10 107 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 STX10O60499 249 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 NDUFB2O95178 105 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 NAPSAO96009 420 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 UCHL1P09936 223 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 CD24P25063 80 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 TAS2R30P59541 319 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 SNAP25P60880 206 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 SMAGPQ0VAQ4 97 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 MED21Q13503 144 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 DNAL1Q4LDG9 190 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 DNM1P34Q6PK57 102 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 SLC35E3Q7Z769 313 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 COA5Q86WW8 74 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 CLDND2Q8NHS1 167 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 RPS4Y2Q8TD47 263 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 NAA38Q9BRA0 125 aaKnown RBP1.15□□□□□ -2.23
USP40-209ENST00000452724 DCUN1D5Q9BTE7 237 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 SLC22A4Q9H015 551 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 PARVAQ9NVD7 372 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 NYNRINQ9P2P1 1898 aaKnown RBP1.15□□□□□ -2.23
USP40-209ENST00000452724 MED13Q9UHV7 2174 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 ZNF532Q9HCE3 1301 aa1.15□□□□□ -2.23
USP40-209ENST00000452724 TMSB15BA0A087X1C1 80 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 TRAV8-1A0A0A6YYK1 113 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 TRGV5A0A0B4J1U4 118 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 TEX50A0A1B0GTY4 177 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 RFPL4AA6NLU0 287 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 RFPL4AL1F8VTS6 287 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 ITGB1BP1O14713 200 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 CETN3O15182 167 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 HPGDSO60760 199 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 ADAP1O75689 374 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 ATP6V1G2O95670 118 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 ANGP03950 147 aaKnown RBP1.14□□□□□ -2.23
USP40-209ENST00000452724 LINC00614P0C842 121 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 SKP1P63208 163 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 C4orf26Q17RF5 130 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 HLA-DRB5Q30154 266 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 CD302Q8IX05 232 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 FAM9CQ8IZT9 166 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 Q8WTZ3 238 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 CYGBQ8WWM9 190 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 PPCDCQ96CD2 204 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 C7orf50Q9BRJ6 194 aaKnown RBP1.14□□□□□ -2.23
USP40-209ENST00000452724 BBS2Q9BXC9 721 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 MROQ9BYG7 248 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 DSCAMO60469 2012 aa1.14□□□□□ -2.23
USP40-209ENST00000452724 ZNF705FA8MVS1 300 aaPredicted RBP1.13□□□□□ -2.23
USP40-209ENST00000452724 ATP5G1P05496 136 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 BPGMP07738 259 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 MIPP30301 263 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 CDK9P50750 372 aaKnown RBP1.13□□□□□ -2.23
USP40-209ENST00000452724 IDH3GP51553 393 aaPredicted RBP1.13□□□□□ -2.23
USP40-209ENST00000452724 UBE2G2P60604 165 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 BTN3A2P78410 334 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 HPCAP84074 193 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 GNA12Q03113 381 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 DMTNQ08495 405 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 EBPQ15125 230 aaKnown RBP1.13□□□□□ -2.23
USP40-209ENST00000452724 ZNF791Q3KP31 576 aaPredicted RBP1.13□□□□□ -2.23
USP40-209ENST00000452724 FAM201AQ5SY85 155 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 SPATA12Q7Z6I5 190 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 LRRC28Q86X40 367 aaPredicted RBP1.13□□□□□ -2.23
USP40-209ENST00000452724 BAP18Q8IXM2 172 aa1.13□□□□□ -2.23
USP40-209ENST00000452724 C1orf174Q8IYL3 243 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms