RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 MRPS11P82912 194 aaKnown RBP11.23□□□□□ -0.61
COL6A3-206ENST00000409809 VN1R2Q8NFZ6 395 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 DMRTA2Q96SC8 542 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 GEMIN7Q9H840 131 aaKnown RBP11.23□□□□□ -0.61
COL6A3-206ENST00000409809 PPIL1Q9Y3C6 166 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 TSC2P49815 1807 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 C2orf83Q53S99 150 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 SFTPA2Q8IWL1 248 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 SFTPA1Q8IWL2 248 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 DHCR7Q9UBM7 475 aaKnown RBP11.23□□□□□ -0.61
COL6A3-206ENST00000409809 C1orf194Q5T5A4 169 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 ATP5L2Q7Z4Y8 100 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 PRNTQ86SH4 94 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 SPEM1Q8N4L4 309 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 ALKBH3Q96Q83 286 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-206ENST00000409809 PSME4Q14997 1843 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 J3QR06 171 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 CLDN14O95500 239 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 SLURP2P0DP57 97 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 CD27P26842 260 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 RNF186Q9NXI6 227 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 RHBDD2Q6NTF9 364 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 SAXO1Q8IYX7 474 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 SPAG8Q99932 426 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-206ENST00000409809 PPBPP02775 128 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 VSIG8P0DPA2 414 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 C1orf100Q5SVJ3 147 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 TNFRSF14Q92956 283 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 LRP5O75197 1615 aa11.23□□□□□ -0.61
COL6A3-206ENST00000409809 SS18L1O75177 396 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-206ENST00000409809 TM4SF4P48230 202 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 TMEFF1Q8IYR6 380 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 AMER3Q8N944 861 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 LOC285556D6RIA3 1793 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 A0A1W2PS18 150 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 MGPP08493 103 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 RBM11P57052 281 aaKnown RBP11.22□□□□□ -0.61
COL6A3-206ENST00000409809 ERVK11-1P61568 191 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 ZNF775Q96BV0 537 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-206ENST00000409809 A0A1B0GUT8 65 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 CDC42EP2O14613 210 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 HOXC4P09017 264 aaPredicted RBP11.22□□□□□ -0.61
COL6A3-206ENST00000409809 FOXF1Q12946 379 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 PLXNB2O15031 1838 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 PRSS8Q16651 343 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 PAPPA2Q9BXP8 1791 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 PRRG2O14669 202 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 ZNF137PP52743 207 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 F11RQ9Y624 299 aaKnown RBP11.22□□□□□ -0.61
COL6A3-206ENST00000409809 DLX6P56179 175 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 MGAT2Q10469 447 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 C8orf88P0DMB2 117 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 PLNP26678 52 aa11.22□□□□□ -0.61
COL6A3-206ENST00000409809 DLL1O00548 723 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 C1QTNF9P0C862 333 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 CDKN3Q16667 212 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 DCAF10Q5QP82 559 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 SLC23A3Q6PIS1 610 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 TRBV24-1A0A075B6N3 115 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 ACSF3Q4G176 576 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-206ENST00000409809 SAMD5Q5TGI4 173 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 ZNF714Q96N38 554 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 G6PC2Q9NQR9 355 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 UBE2L6O14933 153 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 MC5RP33032 325 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 ASIPP42127 132 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 GTF3AQ92664 365 aaKnown RBP11.21□□□□□ -0.61
COL6A3-206ENST00000409809 HARBI1Q96MB7 349 aa11.21□□□□□ -0.61
COL6A3-206ENST00000409809 ORMDL3Q8N138 153 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 OR10J6PQ8NGY7 276 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 GATAD1Q8WUU5 269 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 TWSG1Q9GZX9 223 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 SDK2Q58EX2 2172 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 UMODP07911 640 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 OR2Z1Q8NG97 314 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 ABHD3Q8WU67 409 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 HDHD3Q9BSH5 251 aaPredicted RBP11.21□□□□□ -0.62
COL6A3-206ENST00000409809 TMEM8BA6NDV4 472 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 J3QT63 122 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 CDIPTO14735 213 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 WNT9BO14905 357 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 CBLN1P23435 193 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 ZNF362Q5T0B9 420 aaPredicted RBP11.21□□□□□ -0.62
COL6A3-206ENST00000409809 C6orf15Q6UXA7 325 aaPredicted RBP11.21□□□□□ -0.62
COL6A3-206ENST00000409809 HEPN1Q6WQI6 88 aa11.21□□□□□ -0.62
COL6A3-206ENST00000409809 RBMY1BA6NDE4 496 aaKnown RBP11.2□□□□□ -0.62
COL6A3-206ENST00000409809 RBMY1EA6NEQ0 496 aaKnown RBP11.2□□□□□ -0.62
COL6A3-206ENST00000409809 CEACAM18A8MTB9 384 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 ITGB1BP1O14713 200 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 RBMY1DP0C7P1 496 aaKnown RBP11.2□□□□□ -0.62
COL6A3-206ENST00000409809 RBMY1A1P0DJD3 496 aaKnown RBP11.2□□□□□ -0.62
COL6A3-206ENST00000409809 RBMY1CP0DJD4 496 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 CIARTQ8N365 385 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-206ENST00000409809 HIST1H2BLQ99880 126 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 PSG2P11465 335 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 THSD4Q6ZMP0 1018 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 A0A1W2PPC1 479 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 SOCS1O15524 211 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 F11P03951 625 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 FAM157BP0CG42 384 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms