RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 A0A0B4J2E0 115 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 A0A1B0GX12 115 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 TSPAN2O60636 221 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 HLA-DRB1P01911 266 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 FOLR2P14207 255 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 GATA3P23771 443 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 MC5RP33032 325 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 POLR2IP36954 125 aaKnown RBP6.28□□□□□ -1.4
SCN9A-202ENST00000409435 MRPS11P82912 194 aaKnown RBP6.28□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF880Q6PDB4 577 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 OR8I2Q8N0Y5 310 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 C18orf12Q96KH6 178 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 METTL1Q9UBP6 276 aaKnown RBP6.28□□□□□ -1.4
SCN9A-202ENST00000409435 ADAP1O75689 374 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 COLCA1Q6ZS62 124 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 ARRDC1Q8N5I2 433 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 TNFRSF14Q92956 283 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM186Q96B77 213 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 MRAP2Q96G30 205 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 RARRES2Q99969 163 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 CNOT1A5YKK6 2376 aaKnown RBP6.28□□□□□ -1.4
SCN9A-202ENST00000409435 TRAV40A0A0B4J280 105 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 FAM181BA6NEQ2 426 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 RBFOX2O43251 390 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN9A-202ENST00000409435 SS18L1O75177 396 aaPredicted RBP6.28□□□□□ -1.4
SCN9A-202ENST00000409435 P01737 135 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 RNASE1P07998 156 aaKnown RBP6.28□□□□□ -1.4
SCN9A-202ENST00000409435 ISL1P61371 349 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 MGAT2Q10469 447 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 MRPL54Q6P161 138 aaKnown RBP6.28□□□□□ -1.4
SCN9A-202ENST00000409435 UNQ5815/PRO19632Q6UWF5 114 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM52Q8NDY8 209 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 MCRIP2Q9BUT9 160 aaKnown RBP6.28□□□□□ -1.4
SCN9A-202ENST00000409435 RNF167Q9H6Y7 350 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 UFC1Q9Y3C8 167 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 RALGAPA1Q6GYQ0 2036 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 MYO16Q9Y6X6 1858 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF735P0CB33 412 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 HLA-GP17693 338 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 GZMHP20718 246 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 MST1P26927 711 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 DCTDP32321 178 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 SLC38A11Q08AI6 406 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 GAMTQ14353 236 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 CALHM3Q86XJ0 350 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 OR10G4Q8NGN3 311 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 OR10G9Q8NGN4 311 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 OR10G7Q8NGN6 311 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 C1QTNF3Q9BXJ4 246 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 AUNIPQ9H7T9 357 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 SPRR3Q9UBC9 169 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 ASB1Q9Y576 335 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 MPC2O95563 127 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 PRDX2P32119 198 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 PNKDQ8N490 385 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 PARLQ9H300 379 aa6.28□□□□□ -1.4
SCN9A-202ENST00000409435 MRPL16Q9NX20 251 aaKnown RBP6.28□□□□□ -1.4
SCN9A-202ENST00000409435 IGHV3-43A0A0B4J1X8 118 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 IGHV3-43DP0DP04 118 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 PNLIPRP3Q17RR3 467 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 RBM45Q8IUH3 476 aaKnown RBP6.27□□□□□ -1.41
SCN9A-202ENST00000409435 OR52M1Q8NGK5 317 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 FLYWCH2Q96CP2 140 aaKnown RBP6.27□□□□□ -1.41
SCN9A-202ENST00000409435 IFITM5A6NNB3 132 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 CRYGSP22914 178 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 MFAP4P55083 255 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 ZNF672Q499Z4 452 aaPredicted RBP6.27□□□□□ -1.41
SCN9A-202ENST00000409435 FBLN7Q53RD9 439 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 TBC1D26Q86UD7 250 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 OR5C1Q8NGR4 320 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 ANXA10Q9UJ72 324 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 C11orf94C9JXX5 98 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 EFEMP2O95967 443 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 HTN1P15515 57 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 GPX2P18283 190 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 FOXL1Q12952 345 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 TMEM255AQ5JRV8 349 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 ZNF841Q6ZN19 808 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 C9orf62Q8N4C0 152 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 NEUROG1Q92886 237 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 FBXL17Q9UF56 701 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 PI3P19957 117 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 CIRBPQ14011 172 aaKnown RBP6.27□□□□□ -1.41
SCN9A-202ENST00000409435 LDLRAD2Q5SZI1 272 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 EBLN2Q6P2I7 272 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 STXBP6Q8NFX7 210 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 ST6GAL2Q96JF0 529 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 SIGLEC11Q96RL6 698 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 CLEC7AQ9BXN2 247 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 SRXN1Q9BYN0 137 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 TAS2R4Q9NYW5 299 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 TECRQ9NZ01 308 aaKnown RBP6.27□□□□□ -1.41
SCN9A-202ENST00000409435 EMCNQ9ULC0 261 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 ACACAQ13085 2346 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 SYNGR2O43760 224 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 LEPROTL1O95214 131 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 IGHV3-13P01766 116 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 IGHV3-7P01780 117 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 CTSBP07858 339 aa6.27□□□□□ -1.41
SCN9A-202ENST00000409435 TFPI2P48307 235 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms