RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ZNF343Q6P1L6 599 aa15.7■□□□□ 0.1
USP48-204ENST00000400301 RAB29O14966 203 aa15.7■□□□□ 0.1
USP48-204ENST00000400301 ZNF506Q5JVG8 444 aa15.7■□□□□ 0.1
USP48-204ENST00000400301 RAB24Q969Q5 203 aa15.7■□□□□ 0.1
USP48-204ENST00000400301 ZNF71Q9NQZ8 489 aaPredicted RBP15.7■□□□□ 0.1
USP48-204ENST00000400301 HES1Q14469 280 aa15.7■□□□□ 0.1
USP48-204ENST00000400301 GTF3AQ92664 365 aaKnown RBP15.7■□□□□ 0.1
USP48-204ENST00000400301 SLC45A2Q9UMX9 530 aa15.7■□□□□ 0.1
USP48-204ENST00000400301 TGIF2-C20orf24A0A0A6YYL0 155 aa15.69■□□□□ 0.1
USP48-204ENST00000400301 K7N7A8 449 aa15.69■□□□□ 0.1
USP48-204ENST00000400301 SRP19P09132 144 aaKnown RBP15.69■□□□□ 0.1
USP48-204ENST00000400301 CECR9P0C854 216 aa15.69■□□□□ 0.1
USP48-204ENST00000400301 LYL1P12980 280 aa15.69■□□□□ 0.1
USP48-204ENST00000400301 RPS2P15880 293 aaKnown RBP15.69■□□□□ 0.1
USP48-204ENST00000400301 SLC35E4Q6ICL7 350 aa15.69■□□□□ 0.1
USP48-204ENST00000400301 WDR61Q9GZS3 305 aaKnown RBP15.69■□□□□ 0.1
USP48-204ENST00000400301 PCNX3Q9H6A9 2034 aa15.69■□□□□ 0.1
USP48-204ENST00000400301 NAPSAO96009 420 aa15.69■□□□□ 0.1
USP48-204ENST00000400301 C16orf82Q7Z2V1 217 aa15.69■□□□□ 0.1
USP48-204ENST00000400301 PKDREJQ9NTG1 2253 aa15.69■□□□□ 0.1
USP48-204ENST00000400301 CCL20P78556 96 aa15.69■□□□□ 0.1
USP48-204ENST00000400301 CCL8P80075 99 aa15.69■□□□□ 0.1
USP48-204ENST00000400301 OR4P4Q8NGL7 312 aa15.69■□□□□ 0.1
USP48-204ENST00000400301 USB1Q9BQ65 265 aaKnown RBP15.69■□□□□ 0.1
USP48-204ENST00000400301 MUC22E2RYF6 1773 aaPredicted RBP15.68■□□□□ 0.1
USP48-204ENST00000400301 GYPAP02724 150 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 BPIFB3P59826 476 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 MYPOPQ86VE0 399 aaPredicted RBP15.68■□□□□ 0.1
USP48-204ENST00000400301 C1orf174Q8IYL3 243 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 CMTM2Q8TAZ6 248 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 PSMG3Q9BT73 122 aaPredicted RBP15.68■□□□□ 0.1
USP48-204ENST00000400301 TUBG2Q9NRH3 451 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 CADP27708 2225 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 ELOA3CA0A087WX78 387 aaPredicted RBP15.68■□□□□ 0.1
USP48-204ENST00000400301 SPINK4O60575 86 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 OPRK1P41145 380 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 SPCS3P61009 180 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 PRR27Q6MZM9 219 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 CCL13Q99616 98 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 PRO1933Q9H354 126 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 CISD1Q9NZ45 108 aaKnown RBP15.68■□□□□ 0.1
USP48-204ENST00000400301 NCOA6Q14686 2063 aaPredicted RBP15.68■□□□□ 0.1
USP48-204ENST00000400301 LOC102723971A0A1B0GUV8 181 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 PGA5P0DJD9 388 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 ADCYAP1P18509 176 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 NTF4P34130 210 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 VMA21Q3ZAQ7 101 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 ASCL4Q6XD76 172 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 ANAPC16Q96DE5 110 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 TMEM204Q9BSN7 226 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 FKBP11Q9NYL4 201 aa15.68■□□□□ 0.1
USP48-204ENST00000400301 HEATR1Q9H583 2144 aaKnown RBP15.68■□□□□ 0.1
USP48-204ENST00000400301 ZNF705AQ6ZN79 300 aaPredicted RBP15.67■□□□□ 0.1
USP48-204ENST00000400301 LEAP2Q969E1 77 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 TRAV38-1A0A0B4J264 116 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 ACP7Q6ZNF0 438 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 LYPD6Q86Y78 171 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 RND1Q92730 232 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 P2RX4Q99571 388 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 HES4Q9HCC6 221 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 C17orf98A8MV24 154 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 CD59P13987 128 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 ZNF324BQ6AW86 544 aaPredicted RBP15.67■□□□□ 0.1
USP48-204ENST00000400301 BORCS7Q96B45 105 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 DCTN5Q9BTE1 182 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 DOK5Q9P104 306 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 FUT9Q9Y231 359 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 LILRA1O75019 489 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 TEPPQ6URK8 271 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 LILRB1Q8NHL6 650 aaPredicted RBP15.67■□□□□ 0.1
USP48-204ENST00000400301 BARX1Q9HBU1 254 aaPredicted RBP15.67■□□□□ 0.1
USP48-204ENST00000400301 SPRR3Q9UBC9 169 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 RFNGQ9Y644 331 aa15.67■□□□□ 0.1
USP48-204ENST00000400301 OR10J4P0C629 311 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 PMS2P11Q13670 270 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 C9orf152Q5JTZ5 239 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 LIME1Q9H400 295 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 DENND4AQ7Z401 1863 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 VKORC1L1Q8N0U8 176 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 ZDHHC16Q969W1 377 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 PACRGQ96M98 296 aaPredicted RBP15.66■□□□□ 0.1
USP48-204ENST00000400301 HS3ST6Q96QI5 342 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 SAP30LQ9HAJ7 183 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 CALYQ9NYX4 217 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 PCNX1Q96RV3 2341 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 J3QR06 171 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 PDE6DO43924 150 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 GNG4P50150 75 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 FOXC1Q12948 553 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 PSG5Q15238 335 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 ZNRF1Q8ND25 227 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 OR10G8Q8NGN5 311 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 PRNDQ9UKY0 176 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 PXMP4Q9Y6I8 212 aa15.66■□□□□ 0.1
USP48-204ENST00000400301 MOB3BQ86TA1 216 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 ZNF525Q8N782 197 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 OR13A1Q8NGR1 328 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 RNF138Q8WVD3 245 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 CYYR1Q96J86 154 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 DOCK10Q96BY6 2186 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms